opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMEA103980927
RLITMF uranium mine tailings 2014
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
derived from this sample's metadata and per-run QC
31,704
Reads
126
Observed features
1.966
Shannon
0.407
Evenness
126
Chao1
Where and when
- Collected
- 2014-08
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
ERR1938178
Per-run QC
- 16S identity
- 99.8%
- Q30
- 90.5%
- Region
- V4
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Pseudomonas 577 (1.8%)
- ASV_1112 · Lutibacter 19,865 (62.7%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Archaea 0.0%
- Bacteroidota 68.2%
- Bacillota 15.3%
- Pseudomonadota 12.6%
- Thermodesulfobacteriota 2.5%
- Actinomycetota 0.7%
- Cyanobacteriota 0.2%
- Bdellovibrionota 0.1%
- everything else 0.3%
- Bacteroidia 68.2%
- Gammaproteobacteria 12.1%
- Clostridia 11.1%
- Desulfitobacteriia 3.4%
- Desulfuromonadia 2.5%
- Bacilli 0.8%
- Actinobacteria 0.7%
- everything else 1.2%
- Flavobacteriales 65.8%
- Burkholderiales 8.6%
- Peptostreptococcales-Tissierellales 5.8%
- Clostridiales 4.9%
- Desulfitobacteriales 3.4%
- Pseudomonadales 2.6%
- Bacteroidales 2.4%
- everything else 6.6%
- Flavobacteriaceae 65.8%
- Comamonadaceae 6.8%
- Clostridiaceae 4.9%
- Incertae Sedis 3.5%
- Prolixibacteraceae 2.3%
- Pseudomonadaceae 2.3%
- Desulfuromonadaceae 1.6%
- everything else 13.0%
- Lutibacter 65.7%
- Incertae Sedis 5.5%
- Rhodoferax 5.1%
- TC1 2.9%
- WCHB1-32 2.3%
- Pseudomonas 2.3%
- Proteiniclasticum 1.8%
- everything else 14.3%
- uncultured bacterium 87.3%
- uncultured Flavobacterium sp. 3.0%
- Pseudomonas sp. SMX344 1.8%
- uncultured soil bacterium 1.6%
- Acetoanaerobium pronyense 1.4%
- uncultured beta proteobacterium 0.7%
- uncultured delta proteobacterium 0.6%
- everything else 3.6%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 91% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 67% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
Report a field that is empty or mistaken, or associate a paper with this study. No account is needed; the contact email is optional and used only to reply about this submission.
Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB20465-20260926/.