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SAMEA103980928
RLITMF uranium mine tailings 2014
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
derived from this sample's metadata and per-run QC
7,811
Reads
73
Observed features
2.908
Shannon
0.678
Evenness
73
Chao1
Where and when
- Collected
- 2014-08
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
ERR1938179
Per-run QC
- 16S identity
- 99.2%
- Q30
- 87.9%
- Region
- V4
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Pseudomonas 455 (5.8%)
- ASV_1112 · Lutibacter 2,569 (32.9%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Bacteroidota 41.0%
- Pseudomonadota 34.1%
- Cyanobacteriota 10.5%
- Bacillota 10.4%
- Thermodesulfobacteriota 2.3%
- Actinomycetota 1.1%
- Campylobacterota 0.4%
- everything else 0.2%
- Bacteroidia 41.0%
- Gammaproteobacteria 30.8%
- Sericytochromatia 10.1%
- Clostridia 5.2%
- Desulfitobacteriia 4.1%
- Alphaproteobacteria 3.3%
- Desulfuromonadia 2.3%
- everything else 3.2%
- Flavobacteriales 38.7%
- Burkholderiales 21.4%
- Incertae Sedis 10.1%
- Pseudomonadales 9.2%
- Desulfitobacteriales 4.1%
- Peptostreptococcales-Tissierellales 2.9%
- Rhodobacterales 2.4%
- everything else 11.2%
- Flavobacteriaceae 38.7%
- Incertae Sedis 14.4%
- Comamonadaceae 11.0%
- Pseudomonadaceae 8.0%
- Burkholderiaceae 6.7%
- Paracoccaceae 2.4%
- Prolixibacteraceae 2.1%
- everything else 16.6%
- Lutibacter 38.7%
- Incertae Sedis 18.0%
- Pseudomonas 8.0%
- Rhodoferax 7.4%
- Ralstonia 5.3%
- TC1 3.7%
- WCHB1-32 2.1%
- everything else 16.6%
- uncultured bacterium 75.7%
- uncultured Flavobacterium sp. 5.9%
- Pseudomonas sp. SMX344 5.8%
- uncultured Acinetobacter sp. 1.2%
- Albidiferax ferrireducens 1.2%
- Paraburkholderia caledonica 1.1%
- Staphylococcus sp. ECH3 1.1%
- everything else 8.1%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 67% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 62% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB20465-20260926/.