opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMEA103980931
RLITMF uranium mine tailings 2014
- 1 run(s)
- Illumina MiSeq
- V4
- present
derived from this sample's metadata and per-run QC
10,260
Reads
81
Observed features
3.154
Shannon
0.718
Evenness
81
Chao1
Where and when
- Collected
- 2014-08
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
ERR1938182
Per-run QC
- 16S identity
- 99.4%
- Q30
- 90.9%
- Region
- V4
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 88.1%
- Bacteroidota 11.3%
- Campylobacterota 0.2%
- Bacillota 0.2%
- Bdellovibrionota 0.1%
- Actinomycetota 0.1%
- Cyanobacteriota 0.1%
- Gammaproteobacteria 87.7%
- Bacteroidia 11.3%
- Alphaproteobacteria 0.3%
- Campylobacteria 0.2%
- Actinobacteria 0.1%
- Desulfitobacteriia 0.1%
- Bacteriovoracia 0.1%
- everything else 0.2%
- Pseudomonadales 65.8%
- Burkholderiales 15.4%
- Flavobacteriales 10.8%
- Halothiobacillales 5.3%
- Enterobacterales 1.1%
- Bacteroidales 0.3%
- Rhodobacterales 0.2%
- everything else 1.0%
- Pseudomonadaceae 64.9%
- Flavobacteriaceae 10.8%
- Comamonadaceae 9.9%
- Halothiobacillaceae 5.3%
- Oxalobacteraceae 2.2%
- Rhodocyclaceae 1.3%
- Alcaligenaceae 0.9%
- everything else 4.5%
- Pseudomonas 64.9%
- Maritimimonas 6.3%
- Thiovirga 5.3%
- Lutibacter 4.0%
- Rhodoferax 3.7%
- Comamonas 2.4%
- Herbaspirillum 2.2%
- everything else 11.1%
- Acinetobacter sp. 34.7%
- uncultured bacterium 20.3%
- Pseudomonas sp. SMX344 11.6%
- uncultured Thiovirga sp. 5.3%
- Pseudomonas indoloxydans 4.6%
- Pseudomonas sp. 18III/A01/067 2.9%
- uncultured beta proteobacterium 2.9%
- everything else 17.6%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 94% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 91% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 91% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 90% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 83% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
Report a field that is empty or mistaken, or associate a paper with this study. No account is needed; the contact email is optional and used only to reply about this submission.
Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB20465-20260926/.