opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMEA103980941
RLITMF uranium mine tailings 2014
- 1 run(s)
- Illumina MiSeq
- V4
- present
derived from this sample's metadata and per-run QC
7,659
Reads
49
Observed features
3.003
Shannon
0.772
Evenness
49
Chao1
Where and when
- Collected
- 2014-08
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
ERR1938192
Per-run QC
- 16S identity
- 98.2%
- Q30
- 91.6%
- Region
- V4
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Bacillota 56.1%
- Pseudomonadota 30.5%
- Thermodesulfobacteriota 5.1%
- Acidobacteriota 3.6%
- Actinomycetota 2.8%
- Bacteroidota 1.0%
- Cyanobacteriota 0.9%
- Bacilli 53.0%
- Gammaproteobacteria 26.8%
- Desulfuromonadia 5.1%
- Alphaproteobacteria 3.7%
- Acidobacteriae 3.6%
- Actinobacteria 2.8%
- Desulfitobacteriia 1.3%
- everything else 3.7%
- Bacillales 41.8%
- Burkholderiales 9.3%
- Pseudomonadales 8.8%
- Lysobacterales 7.4%
- Geobacterales 5.1%
- Staphylococcales 4.3%
- Mycoplasmatales 4.2%
- everything else 19.1%
- Bacillaceae 41.8%
- Lysobacteraceae 7.4%
- Comamonadaceae 5.8%
- Geobacteraceae 5.1%
- Moraxellaceae 4.8%
- Staphylococcaceae 4.3%
- Mycoplasmataceae 4.2%
- everything else 26.6%
- Bacillus 41.8%
- Pseudoxanthomonas 5.3%
- Pelotalea 5.1%
- Acinetobacter 4.8%
- Staphylococcus 4.3%
- Eperythrozoon 4.2%
- Pseudomonas 4.0%
- everything else 30.6%
- Bacillus pseudomycoides 26.6%
- uncultured bacterium 18.2%
- Bacillus cereus 15.2%
- uncultured Xanthomonadaceae bacterium 5.3%
- Mycoplasma wenyonii 4.2%
- Hydrogenophaga taeniospiralis 3.9%
- Staphylococcus sp. ECH3 3.6%
- everything else 23.1%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
Report a field that is empty or mistaken, or associate a paper with this study. No account is needed; the contact email is optional and used only to reply about this submission.
Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB20465-20260926/.