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SAMEA103980944
RLITMF uranium mine tailings 2014
- 1 run(s)
- Illumina MiSeq
- V4
- present
derived from this sample's metadata and per-run QC
57,187
Reads
267
Observed features
5.169
Shannon
0.925
Evenness
267
Chao1
Where and when
- Collected
- 2014-08
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
ERR1938195
Per-run QC
- 16S identity
- 98.5%
- Q30
- 95.6%
- Region
- V4
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Bacillota 56.3%
- Pseudomonadota 27.0%
- Actinomycetota 9.6%
- Bacteroidota 3.5%
- Myxococcota 1.7%
- Fusobacteriota 0.9%
- Planctomycetota 0.8%
- everything else 0.2%
- Bacilli 53.1%
- Gammaproteobacteria 19.5%
- Actinobacteria 8.7%
- Alphaproteobacteria 7.5%
- Bacteroidia 3.5%
- Clostridia 2.1%
- Negativicutes 1.1%
- everything else 4.5%
- Staphylococcales 42.4%
- Burkholderiales 10.3%
- Lactobacillales 6.0%
- Pseudomonadales 5.7%
- Mycoplasmatales 4.5%
- Mycobacteriales 3.2%
- Caulobacterales 2.9%
- everything else 25.0%
- Staphylococcaceae 42.4%
- Mycoplasmataceae 4.5%
- Pseudomonadaceae 4.3%
- Comamonadaceae 4.2%
- Oxalobacteraceae 4.0%
- Corynebacteriaceae 3.2%
- Streptococcaceae 3.1%
- everything else 34.4%
- Staphylococcus 42.4%
- Eperythrozoon 4.5%
- Pseudomonas 4.3%
- Streptococcus 3.1%
- Corynebacterium 2.4%
- Brevundimonas 2.4%
- Herminiimonas 2.3%
- everything else 38.7%
- uncultured bacterium 45.7%
- Staphylococcus sp. ECH3 25.4%
- Staphylococcus sp. 3.0%
- iron-reducing bacterium enrichment culture clone FeC_1_E2 2.3%
- Mycoplasma wenyonii 1.9%
- Mycoplasma wenyonii str. Massachusetts 1.9%
- Erythromicrobium ramosum 1.7%
- everything else 18.1%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 66% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 62% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB20465-20260926/.