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SAMEA103980961
RLITMF uranium mine tailings 2014
- 1 run(s)
- Illumina MiSeq
- V4
- present
derived from this sample's metadata and per-run QC
23,967
Reads
199
Observed features
5.242
Shannon
0.99
Evenness
199
Chao1
Where and when
- Collected
- 2014-08
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
ERR1938212
Per-run QC
- 16S identity
- 96.6%
- Q30
- 95.2%
- Region
- V4
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Bacillota 44.5%
- Pseudomonadota 38.2%
- Bacteroidota 9.8%
- Thermodesulfobacteriota 3.8%
- Actinomycetota 3.7%
- Bacilli 44.5%
- Gammaproteobacteria 21.1%
- Alphaproteobacteria 17.1%
- Bacteroidia 9.8%
- Desulfovibrionia 3.8%
- Actinobacteria 2.6%
- Coriobacteriia 1.1%
- Mycoplasmatales 18.5%
- Bacillales 12.2%
- Staphylococcales 11.6%
- Burkholderiales 11.5%
- Azospirillales 10.5%
- Enterobacterales 5.5%
- Rhodobacterales 4.5%
- everything else 25.7%
- Mycoplasmataceae 18.5%
- Bacillaceae 12.2%
- Staphylococcaceae 11.6%
- Azospirillaceae 10.5%
- Comamonadaceae 6.8%
- Alcaligenaceae 4.7%
- Paracoccaceae 4.5%
- everything else 31.3%
- Eperythrozoon 18.5%
- Staphylococcus 11.6%
- Bacillus 9.3%
- Niveispirillum 6.0%
- Parapusillimonas 4.7%
- Skermanella 4.5%
- Desulfovibrio 3.8%
- everything else 41.5%
- uncultured bacterium 45.7%
- Mycoplasma wenyonii 9.0%
- Bacillus pumilus 7.2%
- Mycoplasma wenyonii str. Massachusetts 6.9%
- Staphylococcus sp. ECH3 6.9%
- Azospirillum sp. CDMB 5.0%
- Desulfovibrio sp. A45 3.8%
- everything else 15.5%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB20465-20260926/.