opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMEA103980947
RLITMF uranium mine tailings 2014
- 1 run(s)
- Illumina MiSeq
- V4
- present
derived from this sample's metadata and per-run QC
26,023
Reads
117
Observed features
4.399
Shannon
0.924
Evenness
117
Chao1
Where and when
- Collected
- 2014-08
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
ERR1938198
Per-run QC
- 16S identity
- 97.8%
- Q30
- 95.8%
- Region
- V4
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.5%
- Archaea 0.5%
- Pseudomonadota 77.6%
- Bacillota 15.9%
- Cyanobacteriota 2.7%
- Bacteroidota 2.0%
- Halobacteriota 0.5%
- Acidobacteriota 0.5%
- Actinomycetota 0.5%
- everything else 0.3%
- Gammaproteobacteria 77.4%
- Bacilli 15.2%
- Sericytochromatia 2.7%
- Bacteroidia 2.0%
- Clostridia 0.7%
- Halobacteria 0.5%
- Actinobacteria 0.5%
- everything else 1.0%
- Burkholderiales 68.5%
- Bacillales 13.4%
- Pseudomonadales 8.2%
- Incertae Sedis 2.7%
- Staphylococcales 1.8%
- Flavobacteriales 0.8%
- Enterobacterales 0.6%
- everything else 3.9%
- Comamonadaceae 55.9%
- Bacillaceae 13.4%
- Burkholderiaceae 9.6%
- Pseudomonadaceae 3.9%
- Halomonadaceae 3.5%
- Gallionellaceae 3.0%
- Incertae Sedis 2.7%
- everything else 7.9%
- Hydrogenophaga 54.9%
- Bacillus 13.4%
- Ralstonia 7.3%
- Pseudomonas 3.9%
- Halomonas 3.5%
- Incertae Sedis 3.4%
- Gallionella 3.0%
- everything else 10.5%
- uncultured bacterium 71.9%
- Bacillus subtilis 9.6%
- Bacillus sp. 531-12 3.6%
- uncultured Ralstonia sp. 2.4%
- Paraburkholderia caledonica 2.3%
- Halomonas sp. RS-22 2.3%
- Staphylococcus sp. ECH3 1.2%
- everything else 6.8%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 81% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
Report a field that is empty or mistaken, or associate a paper with this study. No account is needed; the contact email is optional and used only to reply about this submission.
Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB20465-20260926/.