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SAMEA103980952
RLITMF uranium mine tailings 2014
- 1 run(s)
- Illumina MiSeq
- V4
- present
derived from this sample's metadata and per-run QC
13,621
Reads
71
Observed features
3.518
Shannon
0.825
Evenness
71
Chao1
Where and when
- Collected
- 2014-08
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
ERR1938203
Per-run QC
- 16S identity
- 98.6%
- Q30
- 91.4%
- Region
- V4
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 49.2%
- Bacillota 24.0%
- Thermodesulfobacteriota 20.6%
- Bacteroidota 2.8%
- Cyanobacteriota 2.4%
- Actinomycetota 0.7%
- Chlamydiota 0.3%
- everything else 0.1%
- Gammaproteobacteria 42.9%
- Desulfuromonadia 20.6%
- Bacilli 14.2%
- Desulfitobacteriia 7.1%
- Alphaproteobacteria 6.3%
- Bacteroidia 2.8%
- Clostridia 2.7%
- everything else 3.5%
- Geobacterales 20.6%
- Burkholderiales 18.5%
- Pseudomonadales 13.8%
- Bacillales 10.1%
- Lysobacterales 9.6%
- Desulfitobacteriales 7.1%
- Sphingomonadales 5.8%
- everything else 14.6%
- Geobacteraceae 20.6%
- Pseudomonadaceae 13.8%
- Comamonadaceae 13.7%
- Bacillaceae 9.8%
- Lysobacteraceae 9.6%
- Desulfitobacteriaceae 7.1%
- Sphingomonadaceae 5.8%
- everything else 19.7%
- Pelotalea 20.6%
- Pseudomonas 13.8%
- Bacillus 9.1%
- Desulfosporosinus 7.1%
- Pseudoxanthomonas 6.4%
- Rhodoferax 5.9%
- Sphingomonas 5.0%
- everything else 32.2%
- uncultured bacterium 35.1%
- Bacillus pseudomycoides 8.1%
- Desulfosporosinus sp. I2 7.1%
- Pseudoxanthomonas sp. JCM 28245 5.1%
- Albidiferax ferrireducens 5.1%
- Hydrogenophaga taeniospiralis 4.7%
- Sphingomonas sp. 4.3%
- everything else 30.5%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB20465-20260926/.