opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMEA103980960
RLITMF uranium mine tailings 2014
- 1 run(s)
- Illumina MiSeq
- V4
- present
derived from this sample's metadata and per-run QC
35,056
Reads
117
Observed features
4.261
Shannon
0.895
Evenness
117
Chao1
Where and when
- Collected
- 2014-08
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
ERR1938211
Per-run QC
- 16S identity
- 97.9%
- Q30
- 95.9%
- Region
- V4
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.6%
- Archaea 0.4%
- Bacillota 80.7%
- Pseudomonadota 10.6%
- Acidobacteriota 5.4%
- Actinomycetota 2.9%
- Thermoproteota 0.4%
- Bacilli 77.4%
- Gammaproteobacteria 9.1%
- Blastocatellia 3.5%
- Clostridia 3.3%
- Thermoleophilia 2.2%
- Vicinamibacteria 2.0%
- Alphaproteobacteria 1.5%
- everything else 1.1%
- Staphylococcales 71.3%
- Pseudomonadales 6.0%
- Mycoplasmatales 4.7%
- Blastocatellales 3.5%
- Oscillospirales 3.3%
- Burkholderiales 2.9%
- Solirubrobacterales 2.2%
- everything else 6.1%
- Staphylococcaceae 71.3%
- Mycoplasmataceae 4.7%
- Pseudomonadaceae 4.0%
- Blastocatellaceae 3.5%
- Comamonadaceae 2.9%
- Incertae Sedis 2.6%
- Solirubrobacteraceae 2.2%
- everything else 8.8%
- Staphylococcus 71.3%
- Incertae Sedis 8.1%
- Eperythrozoon 4.7%
- Pseudomonas 4.0%
- Solirubrobacter 2.2%
- Halomonas 1.8%
- Comamonas 1.6%
- everything else 6.2%
- uncultured bacterium 41.6%
- Staphylococcus sp. ECH3 39.6%
- Staphylococcus sp. 4.1%
- Mycoplasma wenyonii 4.1%
- Acinetobacter sp. 2.6%
- Halomonas sp. RS-22 1.8%
- Pseudacidovorax sp. CiN003 1.6%
- everything else 4.6%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 66% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
Report a field that is empty or mistaken, or associate a paper with this study. No account is needed; the contact email is optional and used only to reply about this submission.
Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB20465-20260926/.