opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMEA103980942
RLITMF uranium mine tailings 2014
- 1 run(s)
- Illumina MiSeq
- V4
- present
derived from this sample's metadata and per-run QC
9,215
Reads
60
Observed features
3.97
Shannon
0.97
Evenness
60
Chao1
Where and when
- Collected
- 2014-08
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
ERR1938193
Per-run QC
- 16S identity
- 98.5%
- Q30
- 94.4%
- Region
- V4
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 49.7%
- Bacillota 33.2%
- Actinomycetota 9.8%
- Thermodesulfobacteriota 4.0%
- Cyanobacteriota 3.2%
- Gammaproteobacteria 31.3%
- Bacilli 24.4%
- Alphaproteobacteria 18.4%
- Actinobacteria 9.8%
- Desulfotomaculia 4.3%
- Desulfuromonadia 4.0%
- Cyanobacteriia 3.2%
- everything else 4.5%
- Sphingomonadales 16.1%
- Pseudomonadales 13.7%
- Burkholderiales 11.9%
- Mycobacteriales 9.8%
- Staphylococcales 8.6%
- Lysobacterales 5.6%
- Desulfotomaculales 4.3%
- everything else 29.9%
- Sphingomonadaceae 16.1%
- Pseudomonadaceae 9.9%
- Corynebacteriaceae 9.8%
- Staphylococcaceae 8.6%
- Lysobacteraceae 5.6%
- Comamonadaceae 5.3%
- Burkholderiaceae 4.3%
- everything else 40.3%
- Pseudomonas 9.9%
- Sphingorhabdus 8.6%
- Staphylococcus 8.6%
- Corynebacterium 8.3%
- Sphingomonas 7.5%
- Stenotrophomonas 5.6%
- Desulfocucumis 4.3%
- everything else 47.1%
- uncultured bacterium 39.9%
- Pseudomonas sp. A6(2012) 9.9%
- Sphingopyxis sp. TMB2-10 8.6%
- Sphingomonas sp. 7.5%
- Stenotrophomonas maltophilia 5.6%
- Hydra vulgaris 3.8%
- Staphylococcus sp. ECH3 3.8%
- everything else 20.9%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
Report a field that is empty or mistaken, or associate a paper with this study. No account is needed; the contact email is optional and used only to reply about this submission.
Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB20465-20260926/.