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SAMEA103980958
RLITMF uranium mine tailings 2014
- 1 run(s)
- Illumina MiSeq
- V4
- present
derived from this sample's metadata and per-run QC
27,014
Reads
101
Observed features
3.49
Shannon
0.756
Evenness
101
Chao1
Where and when
- Collected
- 2014-08
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
ERR1938209
Per-run QC
- 16S identity
- 99.1%
- Q30
- 93.7%
- Region
- V4
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 97.7%
- Bacteroidota 1.5%
- Actinomycetota 0.3%
- Bacillota 0.2%
- Cyanobacteriota 0.2%
- Campylobacterota 0.1%
- Bdellovibrionota 0.0%
- Gammaproteobacteria 69.5%
- Alphaproteobacteria 28.3%
- Bacteroidia 1.5%
- Actinobacteria 0.3%
- Clostridia 0.1%
- Sericytochromatia 0.1%
- Campylobacteria 0.1%
- everything else 0.1%
- Pseudomonadales 60.6%
- Sphingomonadales 26.7%
- Burkholderiales 8.4%
- Flavobacteriales 1.4%
- Caulobacterales 1.1%
- Rhodobacterales 0.5%
- Enterobacterales 0.3%
- everything else 1.0%
- Pseudomonadaceae 59.1%
- Sphingomonadaceae 26.7%
- Comamonadaceae 4.4%
- Hydrogenophilaceae 2.0%
- Rhodocyclaceae 1.6%
- Moraxellaceae 1.5%
- Flavobacteriaceae 1.4%
- everything else 3.3%
- Pseudomonas 59.1%
- Sphingorhabdus 19.9%
- Sphingobium 5.5%
- Incertae Sedis 2.2%
- Thiobacillus 2.0%
- Rhodoferax 1.8%
- Acinetobacter 1.5%
- everything else 7.9%
- uncultured bacterium 33.1%
- Pseudomonas stutzeri 23.4%
- Sphingopyxis sp. HME6679 19.9%
- Pseudomonas sp. SMX344 8.6%
- Sphingobium sp. E64II 3.1%
- Sphingobium xenophagum 2.4%
- Albidiferax ferrireducens 1.5%
- everything else 8.0%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 74% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 73% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 73% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 70% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 70% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB20465-20260926/.