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SAMEA103980943
RLITMF uranium mine tailings 2014
- 1 run(s)
- Illumina MiSeq
- V4
- present
derived from this sample's metadata and per-run QC
31,232
Reads
166
Observed features
4.977
Shannon
0.974
Evenness
166
Chao1
Where and when
- Collected
- 2014-08
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
ERR1938194
Per-run QC
- 16S identity
- 98.1%
- Q30
- 91.5%
- Region
- V4
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 59.8%
- Bacillota 27.2%
- Actinomycetota 7.5%
- Bacteroidota 4.3%
- Acidobacteriota 1.2%
- Alphaproteobacteria 36.0%
- Bacilli 25.1%
- Gammaproteobacteria 23.8%
- Actinobacteria 7.5%
- Bacteroidia 4.3%
- Clostridia 2.1%
- Acidobacteriae 1.2%
- Hyphomicrobiales 32.3%
- Staphylococcales 15.7%
- Burkholderiales 10.4%
- Pseudomonadales 8.2%
- Mycobacteriales 5.2%
- Bacillales 3.8%
- Cytophagales 3.6%
- everything else 20.8%
- Beijerinckiaceae 31.3%
- Staphylococcaceae 15.7%
- Corynebacteriaceae 5.2%
- Comamonadaceae 5.0%
- Pseudomonadaceae 3.9%
- Cyclobacteriaceae 3.6%
- Sphingomonadaceae 3.2%
- everything else 32.0%
- Methylobacterium 31.3%
- Staphylococcus 15.7%
- Hydrogenophaga 4.6%
- Corynebacterium 4.5%
- Pseudomonas 3.9%
- Algoriphagus 3.6%
- Rheinheimera 2.7%
- everything else 33.6%
- uncultured bacterium 60.4%
- Staphylococcus sp. ECH3 9.3%
- metagenome 2.6%
- Mycoplasma wenyonii 2.1%
- Paraburkholderia caledonica 1.9%
- Planococcus sp. HL2 1.9%
- uncultured Algoriphagus sp. 1.8%
- everything else 20.1%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB20465-20260926/.