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SAMEA103980959
RLITMF uranium mine tailings 2014
- 1 run(s)
- Illumina MiSeq
- V4
- present
derived from this sample's metadata and per-run QC
15,805
Reads
81
Observed features
4.305
Shannon
0.98
Evenness
81
Chao1
Where and when
- Collected
- 2014-08
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
ERR1938210
Per-run QC
- 16S identity
- 97.4%
- Q30
- 89.6%
- Region
- V4
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Bacillota 79.5%
- Pseudomonadota 10.3%
- Actinomycetota 10.1%
- Bacilli 75.3%
- Gammaproteobacteria 10.3%
- Actinobacteria 10.1%
- Clostridia 4.3%
- Staphylococcales 42.0%
- Mycoplasmatales 33.3%
- Micrococcales 5.9%
- Burkholderiales 4.3%
- Lachnospirales 4.3%
- Mycobacteriales 4.2%
- Enterobacterales 3.4%
- everything else 2.7%
- Staphylococcaceae 42.0%
- Mycoplasmataceae 33.3%
- Micrococcaceae 5.9%
- Comamonadaceae 4.3%
- Lachnospiraceae 4.3%
- Corynebacteriaceae 4.2%
- Enterobacteriaceae 3.4%
- everything else 2.7%
- Staphylococcus 42.0%
- Eperythrozoon 33.3%
- Rothia 5.9%
- Roseateles 4.3%
- Anaerobutyricum 4.3%
- Corynebacterium 4.2%
- Enterobacter 3.4%
- everything else 2.7%
- uncultured bacterium 27.6%
- Staphylococcus sp. ECH3 26.1%
- Mycoplasma wenyonii 19.8%
- Mycoplasma wenyonii str. Massachusetts 7.8%
- uncultured Mycoplasma sp. 5.8%
- Corynebacterium sp. 4.2%
- Enterobacter sp. 3.4%
- everything else 5.5%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 62% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB20465-20260926/.