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SAMEA103980945
RLITMF uranium mine tailings 2014
- 1 run(s)
- Illumina MiSeq
- V4
- present
derived from this sample's metadata and per-run QC
31,169
Reads
134
Observed features
4.447
Shannon
0.908
Evenness
134
Chao1
Where and when
- Collected
- 2014-08
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
ERR1938196
Per-run QC
- 16S identity
- 98.4%
- Q30
- 95.7%
- Region
- V4
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 86.0%
- Bacillota 4.3%
- Cyanobacteriota 2.9%
- Actinomycetota 2.3%
- Acidobacteriota 1.5%
- Bacteroidota 1.1%
- Thermodesulfobacteriota 1.0%
- everything else 0.9%
- Gammaproteobacteria 83.2%
- Bacilli 3.6%
- Sericytochromatia 2.9%
- Alphaproteobacteria 2.8%
- Actinobacteria 2.1%
- Acidobacteriae 1.5%
- Bacteroidia 1.1%
- everything else 2.8%
- Burkholderiales 70.0%
- Pseudomonadales 9.9%
- Enterobacterales 3.1%
- Incertae Sedis 2.9%
- Bacillales 2.1%
- Staphylococcales 1.5%
- Subgroup 2 1.5%
- everything else 9.1%
- Comamonadaceae 57.2%
- Burkholderiaceae 9.1%
- Moraxellaceae 6.2%
- Incertae Sedis 4.3%
- Pseudomonadaceae 3.6%
- Aeromonadaceae 2.3%
- Bacillaceae 2.1%
- everything else 15.1%
- Hydrogenophaga 52.0%
- Ralstonia 7.4%
- Acinetobacter 6.0%
- Incertae Sedis 4.9%
- Pseudomonas 3.6%
- Aeromonas 2.3%
- Bacillus 1.8%
- everything else 22.0%
- uncultured bacterium 77.8%
- uncultured Aeromonas sp. 2.3%
- uncultured beta proteobacterium 2.1%
- uncultured Ralstonia sp. 2.0%
- Pseudomonas sp. SMX344 1.3%
- Paraburkholderia caledonica 1.2%
- Bacillus sp. 531-12 1.0%
- everything else 12.4%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 81% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB20465-20260926/.