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SAMEA103980948
RLITMF uranium mine tailings 2014
- 1 run(s)
- Illumina MiSeq
- V4
- present
derived from this sample's metadata and per-run QC
81,942
Reads
489
Observed features
5.685
Shannon
0.918
Evenness
489
Chao1
Where and when
- Collected
- 2014-08
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
ERR1938199
Per-run QC
- 16S identity
- 99.2%
- Q30
- 95.6%
- Region
- V4
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 40.3%
- Bacteroidota 25.7%
- Bacillota 24.8%
- Thermodesulfobacteriota 5.5%
- Actinomycetota 2.1%
- Planctomycetota 0.5%
- Ignavibacteriota 0.4%
- everything else 0.6%
- Gammaproteobacteria 36.3%
- Bacteroidia 25.7%
- Clostridia 12.4%
- Bacilli 9.4%
- Desulfuromonadia 5.5%
- Alphaproteobacteria 4.1%
- Desulfitobacteriia 2.4%
- everything else 4.3%
- Burkholderiales 24.4%
- Flavobacteriales 23.8%
- Pseudomonadales 10.5%
- Peptostreptococcales-Tissierellales 7.3%
- Erysipelotrichales 7.0%
- Desulfuromonadales 5.5%
- Clostridiales 4.1%
- everything else 17.4%
- Flavobacteriaceae 23.7%
- Comamonadaceae 20.8%
- Pseudomonadaceae 8.4%
- Erysipelotrichaceae 7.0%
- Desulfuromonadaceae 5.5%
- Family XI 4.1%
- Clostridiaceae 4.1%
- everything else 26.5%
- Maritimimonas 22.8%
- Hydrogenophaga 18.1%
- Pseudomonas 8.4%
- Incertae Sedis 7.9%
- Erysipelothrix 7.0%
- Desulfuromonas 5.5%
- Fusibacter 2.6%
- everything else 27.8%
- uncultured bacterium 81.0%
- uncultured Anaerobacillus sp. 2.3%
- Pseudomonas sp. SMX344 1.2%
- Fusibacter tunisiensis 1.1%
- uncultured Acinetobacter sp. 1.1%
- metagenome 1.0%
- Hydrogenophaga taeniospiralis 0.9%
- everything else 11.3%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 80% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 62% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB20465-20260926/.