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SAMEA103980946
RLITMF uranium mine tailings 2014
- 1 run(s)
- Illumina MiSeq
- V4
- present
derived from this sample's metadata and per-run QC
19,173
Reads
100
Observed features
4.461
Shannon
0.969
Evenness
100
Chao1
Where and when
- Collected
- 2014-08
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
ERR1938197
Per-run QC
- 16S identity
- 97.3%
- Q30
- 94.4%
- Region
- V4
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 53.5%
- Bacillota 32.5%
- Actinomycetota 9.8%
- Spirochaetota 2.9%
- Bacteroidota 1.1%
- Cyanobacteriota 0.2%
- Gammaproteobacteria 48.7%
- Bacilli 32.5%
- Actinobacteria 9.8%
- Alphaproteobacteria 4.8%
- Spirochaetia 2.9%
- Bacteroidia 1.1%
- Cyanobacteriia 0.2%
- Burkholderiales 44.8%
- Mycoplasmatales 14.5%
- Bacillales 7.7%
- Staphylococcales 6.5%
- Micrococcales 5.8%
- Rhodobacterales 4.8%
- Lysobacterales 3.9%
- everything else 12.1%
- Comamonadaceae 32.7%
- Mycoplasmataceae 14.5%
- Burkholderiaceae 8.0%
- Bacillaceae 7.7%
- Staphylococcaceae 6.5%
- Microbacteriaceae 5.8%
- Paracoccaceae 4.8%
- everything else 20.1%
- Hydrogenophaga 31.8%
- Eperythrozoon 14.5%
- Staphylococcus 6.5%
- Fuscovulum 4.8%
- Ralstonia 4.8%
- Silanimonas 3.9%
- Chryseoglobus 3.8%
- everything else 30.0%
- uncultured bacterium 57.2%
- Mycoplasma wenyonii 10.7%
- Firmicutes str. ikaite c10 3.8%
- Thalassobacillus sp. BS17 HS-2008 3.6%
- Staphylococcus sp. ECH3 3.6%
- uncultured prokaryote 2.9%
- Candidatus Mycoplasma haemobos 2.7%
- everything else 15.6%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB20465-20260926/.