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SAMEA103980949
RLITMF uranium mine tailings 2014
- 1 run(s)
- Illumina MiSeq
- V4
- present
derived from this sample's metadata and per-run QC
111,190
Reads
550
Observed features
4.83
Shannon
0.765
Evenness
550
Chao1
Where and when
- Collected
- 2014-08
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
ERR1938200
Per-run QC
- 16S identity
- 98.8%
- Q30
- 94.3%
- Region
- V4
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Archaea 0.0%
- Bacillota 36.0%
- Bacteroidota 25.4%
- Pseudomonadota 24.8%
- Thermodesulfobacteriota 8.6%
- Actinomycetota 2.9%
- Planctomycetota 0.8%
- Ignavibacteriota 0.7%
- everything else 0.7%
- Bacteroidia 25.4%
- Gammaproteobacteria 19.5%
- Clostridia 18.2%
- Bacilli 14.2%
- Desulfuromonadia 8.6%
- Alphaproteobacteria 5.4%
- Desulfitobacteriia 2.9%
- everything else 6.0%
- Flavobacteriales 23.7%
- Burkholderiales 13.7%
- Peptostreptococcales-Tissierellales 11.3%
- Erysipelotrichales 9.3%
- Desulfuromonadales 8.6%
- Clostridiales 5.5%
- Bacillales 4.8%
- everything else 23.0%
- Flavobacteriaceae 23.6%
- Comamonadaceae 12.3%
- Erysipelotrichaceae 9.3%
- Desulfuromonadaceae 8.6%
- Family XI 7.7%
- Clostridiaceae 5.5%
- Pseudomonadaceae 3.9%
- everything else 29.1%
- Maritimimonas 23.1%
- Hydrogenophaga 10.9%
- Incertae Sedis 10.1%
- Erysipelothrix 9.3%
- Desulfuromonas 8.6%
- Soehngenia 6.8%
- Pseudomonas 3.9%
- everything else 27.4%
- uncultured bacterium 81.4%
- uncultured Anaerobacillus sp. 2.5%
- Psychrobacillus psychrodurans 2.3%
- Hydrogenophaga taeniospiralis 2.2%
- Comamonadaceae bacterium A1 1.4%
- Fusibacter tunisiensis 1.0%
- Pseudomonas sp. SMX344 1.0%
- everything else 8.1%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 80% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 80% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB20465-20260926/.