opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMEA103980950
RLITMF uranium mine tailings 2014
- 1 run(s)
- Illumina MiSeq
- V4
- present
derived from this sample's metadata and per-run QC
95,488
Reads
457
Observed features
3.891
Shannon
0.635
Evenness
457
Chao1
Where and when
- Collected
- 2014-08
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
ERR1938201
Per-run QC
- 16S identity
- 99.0%
- Q30
- 95.5%
- Region
- V4
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Archaea 0.0%
- Bacillota 46.7%
- Bacteroidota 23.1%
- Pseudomonadota 14.4%
- Thermodesulfobacteriota 9.5%
- Actinomycetota 3.9%
- Ignavibacteriota 0.9%
- Planctomycetota 0.8%
- everything else 0.7%
- Clostridia 28.5%
- Bacteroidia 23.1%
- Bacilli 14.1%
- Desulfuromonadia 9.5%
- Gammaproteobacteria 8.2%
- Alphaproteobacteria 6.2%
- Desulfitobacteriia 3.4%
- everything else 7.0%
- Flavobacteriales 21.9%
- Peptostreptococcales-Tissierellales 14.8%
- Erysipelotrichales 13.1%
- Clostridiales 12.5%
- Desulfuromonadales 9.5%
- Burkholderiales 7.0%
- Desulfitobacteriales 3.4%
- everything else 17.9%
- Flavobacteriaceae 21.9%
- Erysipelotrichaceae 13.0%
- Family XI 12.5%
- Clostridiaceae 12.5%
- Desulfuromonadaceae 9.5%
- Comamonadaceae 6.5%
- Incertae Sedis 4.9%
- everything else 19.2%
- Maritimimonas 21.5%
- Incertae Sedis 17.6%
- Erysipelothrix 12.9%
- Soehngenia 11.9%
- Desulfuromonas 9.5%
- Hydrogenophaga 6.1%
- TC1 3.2%
- everything else 17.3%
- uncultured bacterium 89.7%
- Hydrogenophaga taeniospiralis 2.2%
- uncultured Anaerobacillus sp. 0.6%
- Afipia massiliensis 0.5%
- uncultured Planctomyces sp. 0.5%
- Psychrobacillus psychrodurans 0.5%
- Cryobacterium arcticum 0.5%
- everything else 5.4%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 80% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 62% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
Report a field that is empty or mistaken, or associate a paper with this study. No account is needed; the contact email is optional and used only to reply about this submission.
Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB20465-20260926/.