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SAMEA103980953
RLITMF uranium mine tailings 2014
- 1 run(s)
- Illumina MiSeq
- V4
- present
derived from this sample's metadata and per-run QC
28,105
Reads
102
Observed features
3.643
Shannon
0.788
Evenness
102
Chao1
Where and when
- Collected
- 2014-08
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
ERR1938204
Per-run QC
- 16S identity
- 99.0%
- Q30
- 93.3%
- Region
- V4
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 79.7%
- Bacillota 9.4%
- Thermodesulfobacteriota 6.7%
- Bacteroidota 1.9%
- Actinomycetota 0.8%
- Verrucomicrobiota 0.8%
- Cyanobacteriota 0.6%
- everything else 0.1%
- Gammaproteobacteria 79.5%
- Desulfitobacteriia 7.9%
- Desulfuromonadia 6.7%
- Bacteroidia 1.9%
- Actinobacteria 0.8%
- Verrucomicrobiia 0.8%
- Bacilli 0.8%
- everything else 1.7%
- Pseudomonadales 55.2%
- Burkholderiales 22.0%
- Desulfitobacteriales 7.9%
- Desulfuromonadales 6.7%
- Flavobacteriales 1.8%
- Enterobacterales 1.5%
- Opitutales 0.8%
- everything else 4.1%
- Pseudomonadaceae 50.9%
- Comamonadaceae 14.6%
- Incertae Sedis 9.3%
- Desulfuromonadaceae 6.7%
- Rhodocyclaceae 5.7%
- Moraxellaceae 4.3%
- Flavobacteriaceae 1.7%
- everything else 6.8%
- Pseudomonas 50.9%
- TC1 7.9%
- Incertae Sedis 7.6%
- Desulfuromonas 6.7%
- Hydrogenophaga 5.1%
- Acinetobacter 4.0%
- Comamonas 3.0%
- everything else 14.8%
- uncultured bacterium 38.4%
- Acinetobacter sp. 16.1%
- Pseudomonas stutzeri 14.3%
- Pseudomonas sp. SMX344 11.9%
- uncultured Bacilli bacterium 4.3%
- Comamonas aquatica 3.0%
- uncultured Variovorax sp. 2.8%
- everything else 9.3%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 81% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 79% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 77% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 77% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 77% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB20465-20260926/.