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SAMEA103980951
RLITMF uranium mine tailings 2014
- 1 run(s)
- Illumina MiSeq
- V4
- present
derived from this sample's metadata and per-run QC
27,452
Reads
471
Observed features
5.777
Shannon
0.939
Evenness
471
Chao1
Where and when
- Collected
- 2014-08
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
ERR1938202
Per-run QC
- 16S identity
- 98.7%
- Q30
- 94.1%
- Region
- V4
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.2%
- Archaea 0.8%
- Acidobacteriota 32.1%
- Pseudomonadota 20.8%
- Actinomycetota 17.4%
- Chloroflexota 5.1%
- Bacteroidota 4.8%
- Planctomycetota 3.4%
- Myxococcota 3.2%
- everything else 13.2%
- Vicinamibacteria 26.9%
- Gammaproteobacteria 11.1%
- Alphaproteobacteria 9.8%
- Thermoleophilia 7.3%
- Actinobacteria 5.4%
- Bacteroidia 4.8%
- Acidimicrobiia 3.7%
- everything else 31.0%
- Vicinamibacterales 26.7%
- Incertae Sedis 11.6%
- Hyphomicrobiales 6.3%
- Burkholderiales 5.3%
- Chitinophagales 3.8%
- Solirubrobacterales 3.7%
- Gaiellales 3.6%
- everything else 39.0%
- Incertae Sedis 36.7%
- Vicinamibacteraceae 11.4%
- Chitinophagaceae 3.1%
- Xanthobacteraceae 2.8%
- 67-14 2.6%
- Sphingomonadaceae 2.2%
- Comamonadaceae 1.9%
- everything else 39.3%
- Incertae Sedis 63.7%
- Ferruginibacter 1.3%
- Nocardioides 1.2%
- YC-ZSS-LKJ147 1.1%
- Massilia 1.0%
- Solirubrobacter 1.0%
- Gaiella 0.9%
- everything else 29.8%
- uncultured bacterium 58.6%
- uncultured Acidobacteria bacterium 10.3%
- metagenome 7.2%
- uncultured Acidobacteriales bacterium 1.4%
- uncultured soil bacterium 1.0%
- uncultured Comamonadaceae bacterium 0.9%
- uncultured Chloroflexi bacterium 0.9%
- everything else 19.7%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB20465-20260926/.