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SAMEA103980957
RLITMF uranium mine tailings 2014
- 1 run(s)
- Illumina MiSeq
- V4
- present
derived from this sample's metadata and per-run QC
36,674
Reads
80
Observed features
2.319
Shannon
0.529
Evenness
80
Chao1
Where and when
- Collected
- 2014-08
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
ERR1938208
Per-run QC
- 16S identity
- 99.1%
- Q30
- 92.8%
- Region
- V4
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 98.6%
- Bacteroidota 0.8%
- Bacillota 0.3%
- Actinomycetota 0.2%
- Campylobacterota 0.0%
- Cyanobacteriota 0.0%
- Gammaproteobacteria 94.3%
- Alphaproteobacteria 4.3%
- Bacteroidia 0.8%
- Actinobacteria 0.2%
- Desulfitobacteriia 0.1%
- Clostridia 0.1%
- Bacilli 0.1%
- everything else 0.1%
- Pseudomonadales 83.0%
- Burkholderiales 10.8%
- Sphingomonadales 3.7%
- Flavobacteriales 0.8%
- Rhodobacterales 0.4%
- Halothiobacillales 0.4%
- Micrococcales 0.1%
- everything else 0.9%
- Pseudomonadaceae 79.0%
- Comamonadaceae 5.1%
- Hydrogenophilaceae 4.1%
- Moraxellaceae 3.9%
- Sphingomonadaceae 3.7%
- Flavobacteriaceae 0.8%
- Rhodocyclaceae 0.8%
- everything else 2.7%
- Pseudomonas 79.0%
- Thiobacillus 4.1%
- Acinetobacter 3.9%
- Rhodoferax 3.0%
- Sphingobium 2.5%
- Incertae Sedis 1.2%
- Erythrobacter 1.2%
- everything else 5.1%
- Pseudomonas sp. SMX344 56.4%
- uncultured bacterium 12.8%
- Pseudomonas stutzeri 12.4%
- uncultured Bacilli bacterium 9.3%
- Albidiferax ferrireducens 2.5%
- Sphingobium sp. E64II 1.2%
- Erythromicrobium ramosum 1.2%
- everything else 4.2%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 95% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 85% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 84% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 83% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 81% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB20465-20260926/.