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SAMN02906678
T0_BAn_0
- 2 run(s)
- 454 GS FLX+
- V4
- present
derived from this sample's metadata and per-run QC
3,878
Reads
361
Observed features
5.559
Shannon
0.944
Evenness
361
Chao1
Where and when
- Collected
- 2012
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 40, -83.04
- Platforms
- 454 GS FLX+
Runs
SRR1513480, SRR1513481
Per-run QC
- 16S identity
- 81.9%
- Q30
- 91.1%
- Region
- V4
- Read length
- 300 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 97.4%
- Archaea 2.6%
- Pseudomonadota 28.2%
- Actinomycetota 13.0%
- Bacteroidota 10.5%
- Acidobacteriota 10.1%
- Myxococcota 7.5%
- Verrucomicrobiota 7.3%
- Bacillota 4.4%
- everything else 19.0%
- Gammaproteobacteria 14.9%
- Alphaproteobacteria 13.3%
- Bacteroidia 10.5%
- Verrucomicrobiia 7.3%
- Thermoleophilia 7.0%
- Bacilli 4.1%
- bacteriap25 3.8%
- everything else 39.1%
- Incertae Sedis 8.6%
- Burkholderiales 7.2%
- Chitinophagales 6.2%
- Hyphomicrobiales 5.6%
- Sphingomonadales 5.2%
- Gaiellales 4.9%
- Chthoniobacterales 4.4%
- everything else 57.8%
- Incertae Sedis 20.2%
- Chitinophagaceae 6.0%
- Sphingomonadaceae 5.2%
- Chthoniobacteraceae 4.2%
- Bacillaceae 3.6%
- Gemmatimonadaceae 3.4%
- Nitrosomonadaceae 3.2%
- everything else 54.2%
- Incertae Sedis 51.1%
- Sphingomonas 4.7%
- Candidatus Udaeobacter 3.7%
- Nitrospira 2.8%
- Neobacillus 1.8%
- Gaiella 1.7%
- MND1 1.7%
- everything else 32.6%
- uncultured bacterium 68.8%
- metagenome 4.3%
- uncultured Acidobacteria bacterium 2.1%
- uncultured soil bacterium 1.4%
- uncultured archaeon 1.3%
- uncultured Bacillus sp. 1.3%
- uncultured crenarchaeote 1.3%
- everything else 19.5%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 93% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 90% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 89% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 81% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 81% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA254742-20260926/.