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SAMN02906687
T0_BA_0
- 2 run(s)
- 454 GS FLX+
- V4
- present
derived from this sample's metadata and per-run QC
7,989
Reads
502
Observed features
5.729
Shannon
0.921
Evenness
502
Chao1
Where and when
- Collected
- 2012
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 40, -83.04
- Platforms
- 454 GS FLX+
Runs
SRR1513623, SRR1513624
Per-run QC
- 16S identity
- 80.7%
- Q30
- 92.0%
- Region
- V4
- Read length
- 300 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 95.4%
- Archaea 4.6%
- Pseudomonadota 25.7%
- Bacteroidota 14.6%
- Acidobacteriota 11.2%
- Verrucomicrobiota 10.3%
- Actinomycetota 10.2%
- Myxococcota 5.8%
- Thermoproteota 4.6%
- everything else 17.7%
- Bacteroidia 14.6%
- Gammaproteobacteria 13.0%
- Alphaproteobacteria 12.7%
- Verrucomicrobiia 10.3%
- Thermoleophilia 4.8%
- Nitrososphaeria 4.6%
- Actinobacteria 3.8%
- everything else 36.3%
- Chitinophagales 9.4%
- Chthoniobacterales 6.9%
- Incertae Sedis 6.5%
- Hyphomicrobiales 5.6%
- Burkholderiales 5.5%
- Sphingomonadales 5.2%
- Nitrososphaerales 4.6%
- everything else 56.3%
- Incertae Sedis 15.9%
- Chitinophagaceae 9.4%
- Chthoniobacteraceae 6.6%
- Sphingomonadaceae 5.2%
- Nitrososphaeraceae 4.6%
- Pedosphaeraceae 3.1%
- Bacillaceae 3.0%
- everything else 52.3%
- Incertae Sedis 51.1%
- Candidatus Udaeobacter 6.4%
- Sphingomonas 4.7%
- Nitrospira 2.8%
- Lysobacter 1.3%
- Niastella 1.2%
- MND1 1.2%
- everything else 31.4%
- uncultured bacterium 66.7%
- uncultured archaeon 4.3%
- uncultured Acidobacteria bacterium 2.3%
- metagenome 2.1%
- uncultured soil bacterium 1.7%
- uncultured Terrimonas sp. 1.6%
- uncultured Bacteroidetes bacterium 1.1%
- everything else 20.2%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 93% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 88% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 86% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 83% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 82% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA254742-20260926/.