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SAMN02906679
T0_BAn_25
- 1 run(s)
- 454 GS FLX+
- V4
- present
derived from this sample's metadata and per-run QC
5,839
Reads
138
Observed features
4.568
Shannon
0.927
Evenness
138
Chao1
Where and when
- Collected
- 2012
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 40, -83.04
- Platforms
- 454 GS FLX+
Runs
SRR1513482
Per-run QC
- 16S identity
- 87.8%
- Q30
- 81.0%
- Region
- V4
- Read length
- 278 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 97.5%
- Archaea 2.5%
- Pseudomonadota 27.9%
- Acidobacteriota 19.7%
- Chloroflexota 8.7%
- Verrucomicrobiota 7.8%
- Planctomycetota 6.0%
- Gemmatimonadota 5.0%
- Myxococcota 4.1%
- everything else 20.9%
- Gammaproteobacteria 24.1%
- Vicinamibacteria 9.5%
- Verrucomicrobiia 7.8%
- Blastocatellia 7.6%
- Gemmatimonadia 4.6%
- KD4-96 4.4%
- Planctomycetes 4.0%
- everything else 37.9%
- Burkholderiales 17.8%
- Incertae Sedis 13.4%
- Vicinamibacterales 7.3%
- Chthoniobacterales 6.2%
- Gemmatimonadales 4.6%
- Blastocatellales 3.7%
- Rokubacteriales 3.4%
- everything else 43.7%
- Incertae Sedis 25.8%
- Rhodocyclaceae 8.2%
- Vicinamibacteraceae 6.4%
- Chthoniobacteraceae 6.2%
- Gemmatimonadaceae 4.6%
- Oxalobacteraceae 4.2%
- Blastocatellaceae 3.7%
- everything else 40.9%
- Incertae Sedis 60.3%
- Candidatus Udaeobacter 5.5%
- Massilia 4.2%
- Sphingomonas 2.4%
- Nitrospira 2.0%
- Dermacoccus 1.8%
- Azohydromonas 1.8%
- everything else 21.9%
- uncultured bacterium 68.3%
- uncultured Acidobacteria bacterium 5.3%
- Duganella sp. c1 3.5%
- uncultured archaeon 2.5%
- uncultured Alphaproteobacteria bacterium 2.4%
- uncultured delta proteobacterium 2.0%
- Dermacoccus nishinomiyaensis 1.8%
- everything else 14.1%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 87% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 87% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 85% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 83% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 81% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA254742-20260926/.