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SAMN02906694
T39_BA_0
- 2 run(s)
- 454 GS FLX+
- V4
- present
derived from this sample's metadata and per-run QC
7,243
Reads
557
Observed features
5.957
Shannon
0.942
Evenness
557
Chao1
Where and when
- Collected
- 2012
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 40, -83.04
- Platforms
- 454 GS FLX+
Runs
SRR1513639, SRR1513640
Per-run QC
- 16S identity
- 80.8%
- Q30
- 90.9%
- Region
- V4
- Read length
- 300 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 97.8%
- Archaea 2.2%
- Pseudomonadota 23.7%
- Bacteroidota 16.1%
- Verrucomicrobiota 11.9%
- Acidobacteriota 9.3%
- Myxococcota 7.9%
- Actinomycetota 6.6%
- Bacillota 4.6%
- everything else 19.8%
- Bacteroidia 16.1%
- Gammaproteobacteria 15.3%
- Verrucomicrobiia 9.6%
- Alphaproteobacteria 8.4%
- Thermoleophilia 4.3%
- Acidobacteriae 3.5%
- Polyangiia 3.4%
- everything else 39.4%
- Incertae Sedis 9.3%
- Burkholderiales 7.8%
- Chitinophagales 7.2%
- Pedosphaerales 5.0%
- Hyphomicrobiales 4.0%
- Cytophagales 3.9%
- Sphingobacteriales 3.6%
- everything else 59.2%
- Incertae Sedis 20.9%
- Chitinophagaceae 6.4%
- Pedosphaeraceae 5.0%
- Nitrosomonadaceae 3.5%
- Chthoniobacteraceae 3.3%
- Microscillaceae 3.1%
- env.OPS 17 2.9%
- everything else 54.8%
- Incertae Sedis 56.8%
- Candidatus Udaeobacter 3.3%
- Sphingomonas 2.6%
- Nitrospira 2.6%
- MND1 2.2%
- Bryobacter 1.4%
- Hassallia 1.3%
- everything else 29.8%
- uncultured bacterium 70.0%
- metagenome 5.9%
- uncultured delta proteobacterium 2.7%
- uncultured archaeon 2.0%
- uncultured soil bacterium 1.8%
- uncultured beta proteobacterium 1.6%
- Sphingomonas sediminicola 1.2%
- everything else 14.7%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 93% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 89% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 88% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 88% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 87% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA254742-20260926/.