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SAMN02906683
T12_BAn_25
- 1 run(s)
- 454 GS FLX+
- V4
- present
derived from this sample's metadata and per-run QC
7,405
Reads
767
Observed features
6.171
Shannon
0.929
Evenness
767
Chao1
Where and when
- Collected
- 2012
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 40, -83.04
- Platforms
- 454 GS FLX+
Runs
SRR1513618
Per-run QC
- 16S identity
- 85.2%
- Q30
- 95.2%
- Region
- V4
- Read length
- 300 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 94.5%
- Archaea 5.5%
- Pseudomonadota 26.2%
- Actinomycetota 18.7%
- Acidobacteriota 11.2%
- Bacteroidota 6.7%
- Myxococcota 6.0%
- Thermoproteota 5.4%
- Gemmatimonadota 5.2%
- everything else 20.6%
- Gammaproteobacteria 13.5%
- Alphaproteobacteria 12.6%
- Thermoleophilia 9.1%
- Bacteroidia 6.7%
- Nitrososphaeria 5.4%
- Gemmatimonadia 4.9%
- Verrucomicrobiia 4.1%
- everything else 43.7%
- Incertae Sedis 10.7%
- Burkholderiales 9.9%
- Gaiellales 6.9%
- Hyphomicrobiales 5.5%
- Nitrososphaerales 5.4%
- Sphingomonadales 5.0%
- Gemmatimonadales 4.9%
- everything else 51.7%
- Incertae Sedis 24.1%
- Nitrososphaeraceae 5.4%
- Sphingomonadaceae 5.0%
- Gemmatimonadaceae 4.9%
- Nitrosomonadaceae 4.3%
- Chitinophagaceae 3.4%
- Xanthobacteraceae 2.8%
- everything else 50.1%
- Incertae Sedis 57.2%
- Sphingomonas 4.3%
- Rubrobacter 2.3%
- Nitrospira 2.3%
- MND1 2.2%
- Candidatus Udaeobacter 1.7%
- Gaiella 1.4%
- everything else 28.7%
- uncultured bacterium 73.3%
- uncultured archaeon 3.4%
- uncultured soil bacterium 1.8%
- metagenome 1.8%
- uncultured crenarchaeote 1.4%
- uncultured Acidobacteria bacterium 1.1%
- uncultured Comamonadaceae bacterium 1.1%
- everything else 16.2%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 93% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 90% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 86% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 85% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 85% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA254742-20260926/.