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SAMN02906684
T39_BAn_0
- 1 run(s)
- 454 GS FLX+
- V4
- present
derived from this sample's metadata and per-run QC
4,976
Reads
122
Observed features
4.46
Shannon
0.928
Evenness
122
Chao1
Where and when
- Collected
- 2012
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 40, -83.04
- Platforms
- 454 GS FLX+
Runs
SRR1513619
Per-run QC
- 16S identity
- 86.6%
- Q30
- 81.0%
- Region
- V4
- Read length
- 278 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 97.5%
- Archaea 2.5%
- Acidobacteriota 21.1%
- Pseudomonadota 20.5%
- Chloroflexota 13.8%
- Verrucomicrobiota 7.8%
- Planctomycetota 6.0%
- Gemmatimonadota 5.5%
- Actinomycetota 5.4%
- everything else 19.7%
- Gammaproteobacteria 16.6%
- Vicinamibacteria 10.8%
- Verrucomicrobiia 7.8%
- KD4-96 7.0%
- Blastocatellia 6.6%
- Gemmatimonadia 5.1%
- Methylomirabilia 4.2%
- everything else 41.9%
- Incertae Sedis 17.4%
- Burkholderiales 10.8%
- Vicinamibacterales 7.3%
- Chthoniobacterales 5.7%
- Gemmatimonadales 5.1%
- Rokubacteriales 4.2%
- Pyrinomonadales 3.5%
- everything else 45.8%
- Incertae Sedis 30.8%
- Vicinamibacteraceae 7.3%
- Chthoniobacteraceae 5.3%
- Gemmatimonadaceae 5.1%
- Nitrosomonadaceae 4.0%
- Comamonadaceae 3.7%
- Pyrinomonadaceae 3.5%
- everything else 40.2%
- Incertae Sedis 65.9%
- Candidatus Udaeobacter 5.3%
- MND1 2.3%
- Nitrospira 2.2%
- Ramlibacter 2.1%
- Sphingomonas 1.9%
- Ellin6067 1.7%
- everything else 18.6%
- uncultured bacterium 60.1%
- uncultured Acidobacteria bacterium 7.4%
- uncultured soil bacterium 4.3%
- uncultured archaeon 2.5%
- uncultured Chloroflexi bacterium 2.4%
- Bacillus sp. (in: Bacteria) 2.3%
- agricultural soil bacterium SC-I-84 2.2%
- everything else 18.8%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 88% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 87% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 85% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 82% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 81% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA254742-20260926/.