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SAMN02906680
T0_BAn_100
- 1 run(s)
- 454 GS FLX+
- V4
- present
derived from this sample's metadata and per-run QC
7,413
Reads
131
Observed features
2.911
Shannon
0.597
Evenness
131
Chao1
Where and when
- Collected
- 2012
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 40, -83.04
- Platforms
- 454 GS FLX+
Runs
SRR1513483
Per-run QC
- 16S identity
- 93.2%
- Q30
- 82.0%
- Region
- V4
- Read length
- 280 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Unclassified 3,366 (45.4%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 47.6%
- Unclassified 45.4%
- Archaea 7.0%
- Unclassified 45.4%
- Pseudomonadota 17.9%
- Bacillota 7.4%
- Thermoproteota 7.0%
- Chloroflexota 4.5%
- Actinomycetota 3.0%
- Bacteroidota 2.2%
- everything else 12.7%
- Unclassified 45.4%
- Gammaproteobacteria 16.6%
- Nitrososphaeria 7.0%
- Clostridia 4.9%
- KD4-96 3.2%
- Actinobacteria 2.3%
- Bacteroidia 2.2%
- everything else 18.5%
- Unclassified 45.4%
- Burkholderiales 8.5%
- Nitrososphaerales 7.0%
- Incertae Sedis 5.8%
- Pseudomonadales 4.8%
- Lysobacterales 2.7%
- Clostridiales 2.6%
- everything else 23.1%
- Unclassified 45.4%
- Incertae Sedis 8.1%
- Nitrososphaeraceae 7.0%
- Oxalobacteraceae 6.9%
- Pseudomonadaceae 4.4%
- Lysobacteraceae 2.7%
- Clostridiaceae 2.0%
- everything else 23.5%
- Unclassified 45.4%
- Incertae Sedis 22.1%
- Pseudomonas 4.4%
- Massilia 4.4%
- Noviherbaspirillum 2.6%
- Lysobacter 2.2%
- Clostridium 2.0%
- everything else 16.9%
- Unclassified 45.4%
- uncultured bacterium 29.5%
- uncultured archaeon 7.0%
- Pseudomonas sp. SRMND14A 3.5%
- uncultured beta proteobacterium 2.4%
- uncultured Thermomonas sp. 1.2%
- Variovorax sp. TA_DQ 1.1%
- everything else 10.0%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- same collection date
- shared: 454 GS FLX+, V4
- same collection date
- shared: 454 GS FLX+, V4
- same collection date
- shared: 454 GS FLX+, V4
- same collection date
- shared: 454 GS FLX+, V4
- same collection date
- shared: 454 GS FLX+, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA254742-20260926/.