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SAMN02906693
T12_BA_100
- 2 run(s)
- 454 GS FLX+
- V4
- present
derived from this sample's metadata and per-run QC
9,496
Reads
304
Observed features
4.988
Shannon
0.873
Evenness
304
Chao1
Where and when
- Collected
- 2012
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 40, -83.04
- Platforms
- 454 GS FLX+
Runs
SRR1513637, SRR1513638
Per-run QC
- 16S identity
- 82.0%
- Q30
- 91.2%
- Region
- V4
- Read length
- 300 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 98.9%
- Archaea 1.1%
- Pseudomonadota 50.1%
- Bacillota 23.0%
- Bacteroidota 10.5%
- Verrucomicrobiota 5.0%
- Thermodesulfobacteriota 3.4%
- Actinomycetota 1.5%
- Acidobacteriota 1.3%
- everything else 5.2%
- Gammaproteobacteria 36.2%
- Alphaproteobacteria 13.9%
- Clostridia 13.5%
- Bacteroidia 10.5%
- Verrucomicrobiia 5.0%
- Negativicutes 3.5%
- Desulfuromonadia 3.3%
- everything else 14.0%
- Burkholderiales 19.1%
- Pseudomonadales 15.8%
- Chitinophagales 5.2%
- Lachnospirales 4.7%
- Incertae Sedis 4.5%
- Caulobacterales 4.3%
- Hyphomicrobiales 3.6%
- everything else 42.8%
- Pseudomonadaceae 15.5%
- Rhodocyclaceae 7.9%
- Chitinophagaceae 5.2%
- Lachnospiraceae 4.7%
- Caulobacteraceae 4.3%
- Sporomusaceae 3.5%
- Incertae Sedis 3.4%
- everything else 55.5%
- Incertae Sedis 22.2%
- Pseudomonas 15.5%
- Dechloromonas 5.1%
- Dyadobacter 3.4%
- Phenylobacterium 3.2%
- Massilia 3.1%
- Cupriavidus 3.1%
- everything else 44.5%
- uncultured bacterium 47.5%
- Pseudomonas sp. SRMND14A 8.5%
- Pseudomonas taiwanensis 5.0%
- Dyadobacter sp. 3.4%
- Duganella sp. c1 3.1%
- Azospirillum brasilense 2.9%
- Cupriavidus sp. DG8 2.9%
- everything else 26.8%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 63% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 63% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 62% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 60% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 59% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA254742-20260926/.