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SAMN02906688
T0_BA_25
- 2 run(s)
- 454 GS FLX+
- V4
- present
derived from this sample's metadata and per-run QC
10,809
Reads
445
Observed features
4.905
Shannon
0.804
Evenness
445
Chao1
Where and when
- Collected
- 2012
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 40, -83.04
- Platforms
- 454 GS FLX+
Runs
SRR1513625, SRR1513626
Per-run QC
- 16S identity
- 83.2%
- Q30
- 92.3%
- Region
- V4
- Read length
- 300 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 97.1%
- Archaea 2.9%
- Pseudomonadota 64.2%
- Actinomycetota 6.7%
- Bacteroidota 6.4%
- Acidobacteriota 4.6%
- Verrucomicrobiota 2.8%
- Thermoproteota 2.8%
- Myxococcota 2.6%
- everything else 9.9%
- Gammaproteobacteria 59.0%
- Bacteroidia 6.4%
- Alphaproteobacteria 5.2%
- Thermoleophilia 3.4%
- Verrucomicrobiia 2.8%
- Nitrososphaeria 2.8%
- Actinobacteria 2.2%
- everything else 18.3%
- Pseudomonadales 46.0%
- Burkholderiales 11.5%
- Chitinophagales 3.5%
- Incertae Sedis 3.3%
- Hyphomicrobiales 2.9%
- Nitrososphaerales 2.8%
- Gaiellales 2.6%
- everything else 27.3%
- Pseudomonadaceae 31.5%
- Moraxellaceae 14.6%
- Incertae Sedis 8.1%
- Oxalobacteraceae 4.9%
- Chitinophagaceae 3.3%
- Rhodocyclaceae 2.9%
- Nitrososphaeraceae 2.8%
- everything else 32.0%
- Pseudomonas 31.5%
- Incertae Sedis 26.4%
- Acinetobacter 14.6%
- Massilia 4.7%
- Aromatoleum 1.8%
- Sphingomonas 1.5%
- Candidatus Udaeobacter 1.4%
- everything else 18.2%
- uncultured bacterium 34.0%
- Pseudomonas sp. SRMND14A 25.0%
- bacterium 12.5%
- Duganella sp. c1 4.7%
- uncultured archaeon 2.1%
- Pseudomonas sp. 2.1%
- metagenome 1.7%
- everything else 17.9%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 81% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 62% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 59% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 58% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 51% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA254742-20260926/.