opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN02906690
T4_BA_25
- 4 run(s)
- 454 GS FLX+
- V4
- present
derived from this sample's metadata and per-run QC
31,470
Reads
1,152
Observed features
6.078
Shannon
0.862
Evenness
1,152
Chao1
Where and when
- Collected
- 2012
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 40, -83.04
- Platforms
- 454 GS FLX+
Runs
SRR1513629, SRR1513630, SRR1513631, SRR1513632
Per-run QC
- 16S identity
- 83.6%
- Q30
- 92.3%
- Region
- V4
- Read length
- 300 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_3334 · Cellvibrio 1,035 (3.3%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 98.0%
- Archaea 2.0%
- Pseudomonadota 56.3%
- Bacteroidota 14.5%
- Verrucomicrobiota 5.7%
- Bacillota 4.1%
- Acidobacteriota 3.8%
- Actinomycetota 3.7%
- Myxococcota 2.2%
- everything else 9.7%
- Gammaproteobacteria 46.5%
- Bacteroidia 14.5%
- Alphaproteobacteria 9.9%
- Verrucomicrobiia 5.7%
- Clostridia 2.9%
- Nitrososphaeria 2.0%
- Desulfuromonadia 1.9%
- everything else 16.7%
- Pseudomonadales 27.3%
- Burkholderiales 17.4%
- Sphingobacteriales 5.5%
- Caulobacterales 3.9%
- Chitinophagales 3.4%
- Flavobacteriales 2.8%
- Cytophagales 2.7%
- everything else 37.1%
- Cellvibrionaceae 19.3%
- Pseudomonadaceae 7.5%
- Incertae Sedis 5.2%
- Sphingobacteriaceae 4.9%
- Rhodocyclaceae 4.3%
- Caulobacteraceae 3.8%
- Comamonadaceae 3.5%
- everything else 51.5%
- Incertae Sedis 24.6%
- Cellvibrio 19.3%
- Pseudomonas 7.5%
- Sphingobacterium 4.4%
- Phenylobacterium 3.3%
- Massilia 3.0%
- Dyadobacter 2.1%
- everything else 35.7%
- uncultured bacterium 54.8%
- Sphingobacterium multivorum 4.4%
- uncultured prokaryote 3.6%
- Duganella sp. c1 2.8%
- Dyadobacter sp. 2.1%
- Pseudomonas sp. SRMND14A 2.1%
- Cupriavidus sp. DG8 2.0%
- everything else 28.1%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 63% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 52% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 51% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- same collection date
- shared: 454 GS FLX+, V4
- same collection date
- shared: 454 GS FLX+, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA254742-20260926/.