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SAMN02906692
T12_BA_25
- 2 run(s)
- 454 GS FLX+
- V4
- present
derived from this sample's metadata and per-run QC
9,057
Reads
461
Observed features
5.303
Shannon
0.865
Evenness
461
Chao1
Where and when
- Collected
- 2012
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 40, -83.04
- Platforms
- 454 GS FLX+
Runs
SRR1513635, SRR1513636
Per-run QC
- 16S identity
- 81.3%
- Q30
- 91.3%
- Region
- V4
- Read length
- 300 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 96.9%
- Archaea 3.1%
- Pseudomonadota 43.0%
- Bacteroidota 17.4%
- Verrucomicrobiota 7.2%
- Acidobacteriota 5.6%
- Actinomycetota 4.4%
- Bacillota 3.2%
- Thermoproteota 3.1%
- everything else 16.1%
- Gammaproteobacteria 35.1%
- Bacteroidia 17.4%
- Alphaproteobacteria 7.9%
- Verrucomicrobiia 7.2%
- Nitrososphaeria 3.1%
- Desulfuromonadia 2.7%
- Thermoleophilia 2.5%
- everything else 24.0%
- Burkholderiales 20.4%
- Pseudomonadales 11.7%
- Chitinophagales 9.9%
- Incertae Sedis 3.9%
- Flavobacteriales 3.5%
- Cytophagales 3.2%
- Nitrososphaerales 3.1%
- everything else 44.2%
- Chitinophagaceae 9.9%
- Incertae Sedis 7.5%
- Rhodocyclaceae 7.4%
- Pseudomonadaceae 5.5%
- Methylophilaceae 4.6%
- Comamonadaceae 4.6%
- Moraxellaceae 3.7%
- everything else 56.8%
- Incertae Sedis 42.9%
- Pseudomonas 5.5%
- Flavobacterium 3.4%
- Pseudazoarcus 3.1%
- Aquabacterium 3.1%
- Dechloromonas 2.9%
- Cellvibrio 2.5%
- everything else 36.6%
- uncultured bacterium 64.9%
- metagenome 4.4%
- uncultured prokaryote 4.0%
- Pseudomonas sp. SRMND14A 4.0%
- uncultured archaeon 3.1%
- Dyadobacter sp. 1.8%
- Cupriavidus sp. DG8 1.4%
- everything else 16.4%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 71% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 71% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 70% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 66% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 65% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA254742-20260926/.