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SAMN02906681
T4_BAn_25
- 1 run(s)
- 454 GS FLX+
- V4
- present
derived from this sample's metadata and per-run QC
4,744
Reads
144
Observed features
4.303
Shannon
0.866
Evenness
144
Chao1
Where and when
- Collected
- 2012
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 40, -83.04
- Platforms
- 454 GS FLX+
Runs
SRR1513484
Per-run QC
- 16S identity
- 92.5%
- Q30
- 81.2%
- Region
- V4
- Read length
- 278 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 96.7%
- Archaea 3.3%
- Pseudomonadota 25.9%
- Acidobacteriota 11.9%
- Thermodesulfobacteriota 10.9%
- Verrucomicrobiota 10.2%
- Chloroflexota 8.2%
- Bacillota 6.3%
- Actinomycetota 5.2%
- everything else 21.4%
- Gammaproteobacteria 23.2%
- Verrucomicrobiia 10.2%
- Desulfuromonadia 9.6%
- Vicinamibacteria 7.4%
- Clostridia 4.7%
- Blastocatellia 3.6%
- Chloroflexia 3.6%
- everything else 37.7%
- Burkholderiales 15.9%
- Geobacterales 9.1%
- Chthoniobacterales 8.8%
- Incertae Sedis 8.2%
- Vicinamibacterales 5.9%
- Pseudomonadales 4.2%
- Chloroflexales 3.6%
- everything else 44.4%
- Incertae Sedis 15.7%
- Rhodocyclaceae 10.5%
- Geobacteraceae 9.1%
- Chthoniobacteraceae 8.5%
- Vicinamibacteraceae 5.3%
- Roseiflexaceae 3.6%
- Nitrososphaeraceae 3.3%
- everything else 44.1%
- Incertae Sedis 42.7%
- Pseudazoarcus 10.5%
- Candidatus Udaeobacter 7.4%
- Geomonas 6.3%
- Pseudomonas 2.9%
- Anaerovorax 2.2%
- Massilia 2.2%
- everything else 25.9%
- uncultured bacterium 58.4%
- bioreactor metagenome 10.3%
- metagenome 6.3%
- uncultured archaeon 3.3%
- Pseudomonas sp. CL1.82 2.9%
- uncultured Caldilineaceae bacterium 2.9%
- Duganella sp. c1 2.2%
- everything else 13.7%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 73% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 71% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 69% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 66% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 66% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA254742-20260926/.