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SAMN02906685
T39_BAn_25
- 1 run(s)
- 454 GS FLX+
- V4
- present
derived from this sample's metadata and per-run QC
6,772
Reads
124
Observed features
4.438
Shannon
0.921
Evenness
124
Chao1
Where and when
- Collected
- 2012
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 40, -83.04
- Platforms
- 454 GS FLX+
Runs
SRR1513620
Per-run QC
- 16S identity
- 93.0%
- Q30
- 82.3%
- Region
- V4
- Read length
- 283 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 97.2%
- Archaea 2.8%
- Bacillota 21.5%
- Thermodesulfobacteriota 17.8%
- Pseudomonadota 14.2%
- Verrucomicrobiota 10.4%
- Acidobacteriota 10.0%
- Planctomycetota 6.1%
- Chloroflexota 5.3%
- everything else 14.5%
- Desulfuromonadia 15.0%
- Gammaproteobacteria 13.9%
- Clostridia 11.8%
- Verrucomicrobiia 10.4%
- Negativicutes 5.3%
- Vicinamibacteria 4.7%
- Phycisphaerae 4.0%
- everything else 34.8%
- Geobacterales 14.2%
- Incertae Sedis 11.8%
- Burkholderiales 9.6%
- Chthoniobacterales 6.6%
- Veillonellales-Selenomonadales 5.3%
- Vicinamibacterales 4.1%
- Tepidisphaerales 3.8%
- everything else 44.5%
- Geobacteraceae 14.2%
- Incertae Sedis 13.6%
- Rhodocyclaceae 6.8%
- Chthoniobacteraceae 6.6%
- Sporomusaceae 5.3%
- Gracilibacteraceae 4.4%
- Vicinamibacteraceae 4.1%
- everything else 45.0%
- Incertae Sedis 50.2%
- Candidatus Udaeobacter 6.6%
- Geomonas 5.0%
- Gracilibacter 4.4%
- Thermincola 3.1%
- Methyloversatilis 2.9%
- Oleiharenicola 2.5%
- everything else 25.3%
- uncultured bacterium 65.7%
- uncultured delta proteobacterium 5.9%
- uncultured Acidobacteria bacterium 4.1%
- bacterium EFRS3102 2.9%
- uncultured archaeon 2.8%
- iron-reducing bacterium enrichment culture clone FEA_2_B3 2.8%
- bacterium RS5A 2.5%
- everything else 13.2%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 79% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 76% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 74% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 73% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 73% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA254742-20260926/.