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SAMN02906682
T4_BAn_100
- 1 run(s)
- 454 GS FLX+
- V4
- present
derived from this sample's metadata and per-run QC
6,820
Reads
482
Observed features
5.197
Shannon
0.841
Evenness
482
Chao1
Where and when
- Collected
- 2012
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 40, -83.04
- Platforms
- 454 GS FLX+
Runs
SRR1513617
Per-run QC
- 16S identity
- 84.6%
- Q30
- 95.1%
- Region
- V4
- Read length
- 300 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 97.9%
- Archaea 2.1%
- Pseudomonadota 55.4%
- Bacteroidota 9.1%
- Verrucomicrobiota 6.0%
- Actinomycetota 5.0%
- Acidobacteriota 4.3%
- Planctomycetota 3.0%
- Bdellovibrionota 2.3%
- everything else 14.9%
- Gammaproteobacteria 39.6%
- Alphaproteobacteria 15.8%
- Bacteroidia 9.1%
- Verrucomicrobiia 6.0%
- Thermoleophilia 2.8%
- Gemmatimonadia 2.2%
- Nitrososphaeria 2.0%
- everything else 22.5%
- Pseudomonadales 19.3%
- Burkholderiales 18.2%
- Cytophagales 6.8%
- Incertae Sedis 6.5%
- Sphingomonadales 4.3%
- Hyphomicrobiales 3.9%
- Pedosphaerales 3.8%
- everything else 37.1%
- Pseudomonadaceae 16.9%
- Incertae Sedis 10.8%
- Microscillaceae 6.7%
- Rhodocyclaceae 5.8%
- Sphingomonadaceae 4.3%
- Methylophilaceae 4.3%
- Pedosphaeraceae 3.8%
- everything else 47.4%
- Incertae Sedis 42.4%
- Pseudomonas 16.9%
- Sphingomonas 3.7%
- Ferrovibrio 3.1%
- Cupriavidus 2.9%
- Acidovorax 2.3%
- Nitrospira 1.9%
- everything else 26.8%
- uncultured bacterium 51.6%
- Pseudomonas sp. SRMND14A 13.9%
- uncultured prokaryote 4.0%
- Cupriavidus pauculus 2.9%
- uncultured beta proteobacterium 2.2%
- uncultured archaeon 2.1%
- metagenome 1.8%
- everything else 21.5%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 92% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 70% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 68% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 68% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 68% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA254742-20260926/.