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SAMN02906695
T39_BA_25
- 2 run(s)
- 454 GS FLX+
- V4
- present
derived from this sample's metadata and per-run QC
10,145
Reads
445
Observed features
5.196
Shannon
0.852
Evenness
445
Chao1
Where and when
- Collected
- 2012
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 40, -83.04
- Platforms
- 454 GS FLX+
Runs
SRR1513641, SRR1513642
Per-run QC
- 16S identity
- 83.2%
- Q30
- 90.9%
- Region
- V4
- Read length
- 300 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 97.8%
- Archaea 2.2%
- Pseudomonadota 57.6%
- Bacteroidota 9.6%
- Verrucomicrobiota 6.2%
- Acidobacteriota 3.8%
- Actinomycetota 3.3%
- Cyanobacteriota 2.8%
- Planctomycetota 2.4%
- everything else 14.3%
- Gammaproteobacteria 46.3%
- Alphaproteobacteria 11.3%
- Bacteroidia 9.6%
- Verrucomicrobiia 6.2%
- Vampirivibrionia 2.7%
- Nitrososphaeria 2.2%
- Thermoleophilia 1.9%
- everything else 19.8%
- Pseudomonadales 24.3%
- Burkholderiales 18.2%
- Cytophagales 7.6%
- Incertae Sedis 5.7%
- Sphingomonadales 3.5%
- Pedosphaerales 3.0%
- Ferrovibrionales 3.0%
- everything else 34.6%
- Pseudomonadaceae 20.6%
- Incertae Sedis 9.3%
- Microscillaceae 7.6%
- Methylophilaceae 6.4%
- Rhodocyclaceae 4.3%
- Sphingomonadaceae 3.5%
- Comamonadaceae 3.5%
- everything else 44.7%
- Incertae Sedis 40.8%
- Pseudomonas 20.6%
- Sphingomonas 3.4%
- Ferrovibrio 3.0%
- Cellvibrio 2.3%
- Cupriavidus 2.2%
- Nitrospira 1.7%
- everything else 25.9%
- uncultured bacterium 48.4%
- Pseudomonas sp. SRMND14A 18.5%
- uncultured prokaryote 6.1%
- Cupriavidus pauculus 2.2%
- uncultured beta proteobacterium 1.9%
- Pseudomonas sp. AASRB2 1.7%
- metagenome 1.7%
- everything else 19.4%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 92% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 72% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 71% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 65% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 64% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA254742-20260926/.