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SAMN02906689
T0_BA_100
- 2 run(s)
- 454 GS FLX+
- V4
- present
derived from this sample's metadata and per-run QC
8,781
Reads
417
Observed features
4.957
Shannon
0.822
Evenness
417
Chao1
Where and when
- Collected
- 2012
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 40, -83.04
- Platforms
- 454 GS FLX+
Runs
SRR1513627, SRR1513628
Per-run QC
- 16S identity
- 82.3%
- Q30
- 92.1%
- Region
- V4
- Read length
- 300 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 98.1%
- Archaea 1.9%
- Pseudomonadota 57.8%
- Bacteroidota 8.3%
- Actinomycetota 7.6%
- Acidobacteriota 5.3%
- Verrucomicrobiota 3.7%
- Bacillota 3.4%
- Myxococcota 2.7%
- everything else 11.3%
- Gammaproteobacteria 50.7%
- Bacteroidia 8.3%
- Alphaproteobacteria 7.0%
- Thermoleophilia 3.7%
- Verrucomicrobiia 3.7%
- Actinobacteria 3.1%
- Bacilli 3.0%
- everything else 20.5%
- Pseudomonadales 42.4%
- Burkholderiales 5.3%
- Chitinophagales 4.6%
- Incertae Sedis 4.3%
- Hyphomicrobiales 3.5%
- Gaiellales 2.9%
- Bacillales 2.7%
- everything else 34.1%
- Pseudomonadaceae 38.6%
- Incertae Sedis 10.2%
- Chitinophagaceae 4.2%
- Moraxellaceae 3.6%
- Bacillaceae 2.7%
- Sphingomonadaceae 2.2%
- Nitrospiraceae 2.0%
- everything else 36.5%
- Pseudomonas 38.6%
- Incertae Sedis 31.7%
- Acinetobacter 3.5%
- Nitrospira 2.0%
- Sphingomonas 1.9%
- Candidatus Udaeobacter 1.4%
- Massilia 1.3%
- everything else 19.6%
- uncultured bacterium 40.3%
- Pseudomonas sp. 23.3%
- Pseudomonas sp. SRMND14A 9.1%
- Pseudomonas gingeri 5.8%
- bacterium 3.5%
- uncultured archaeon 1.6%
- metagenome 1.5%
- everything else 14.9%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 81% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 72% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 68% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 57% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 52% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA254742-20260926/.