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SAMN02906686
T39_BAn_100
- 2 run(s)
- 454 GS FLX+
- V4
- present
derived from this sample's metadata and per-run QC
11,216
Reads
328
Observed features
4.754
Shannon
0.821
Evenness
328
Chao1
Where and when
- Collected
- 2012
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 40, -83.04
- Platforms
- 454 GS FLX+
Runs
SRR1513621, SRR1513622
Per-run QC
- 16S identity
- 82.8%
- Q30
- 92.1%
- Region
- V4
- Read length
- 300 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 90.0%
- Archaea 10.1%
- Bacillota 52.0%
- Thermodesulfobacteriota 13.8%
- Halobacteriota 9.2%
- Pseudomonadota 7.0%
- Acidobacteriota 4.1%
- Actinomycetota 3.0%
- Planctomycetota 2.9%
- everything else 8.1%
- Clostridia 46.9%
- Desulfuromonadia 13.5%
- Methanosarcinia 9.2%
- Gammaproteobacteria 4.5%
- Acidobacteriae 3.0%
- Phycisphaerae 2.8%
- Negativicutes 2.7%
- everything else 17.4%
- Incertae Sedis 20.6%
- Geobacterales 13.5%
- Oscillospirales 13.1%
- Methanosarcinales 9.2%
- Lachnospirales 7.9%
- Terriglobales 2.8%
- Veillonellales-Selenomonadales 2.7%
- everything else 30.2%
- Geobacteraceae 13.5%
- Oscillospiraceae 13.1%
- Gracilibacteraceae 12.7%
- Incertae Sedis 11.4%
- Methanosarcinaceae 9.2%
- Lachnospiraceae 7.9%
- Sporomusaceae 2.7%
- everything else 29.6%
- Incertae Sedis 34.4%
- Gracilibacter 12.7%
- Ruminiclostridium 11.2%
- Methanosarcina 9.2%
- Geomonas 4.3%
- Clostridium 2.4%
- Azotobacter 2.0%
- everything else 23.8%
- uncultured bacterium 60.4%
- Methanosarcina sp. RPS13 6.8%
- Clostridium sp. FCB90-3 6.0%
- iron-reducing bacterium enrichment culture clone FEA_2_B3 5.2%
- uncultured Clostridium sp. 4.1%
- uncultured Methanosarcina sp. 2.4%
- uncultured delta proteobacterium 2.1%
- everything else 13.0%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 57% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 51% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- same collection date
- shared: 454 GS FLX+, V4
- same collection date
- shared: 454 GS FLX+, V4
- same collection date
- shared: 454 GS FLX+, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA254742-20260926/.