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SAMN02906691
T4_BA_100
- 2 run(s)
- 454 GS FLX+
- V4
- present
derived from this sample's metadata and per-run QC
11,467
Reads
236
Observed features
3.861
Shannon
0.707
Evenness
236
Chao1
Where and when
- Collected
- 2012
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 40, -83.04
- Platforms
- 454 GS FLX+
Runs
SRR1513633, SRR1513634
Per-run QC
- 16S identity
- 83.9%
- Q30
- 92.7%
- Region
- V4
- Read length
- 300 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1112 · Clostridium 1,647 (14.4%)
- ASV_2223 · Clostridium 1,263 (11.0%)
- ASV_4445 · Pseudomonas 1,031 (9.0%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.0%
- Archaea 1.0%
- Pseudomonadota 52.6%
- Bacillota 38.3%
- Thermodesulfobacteriota 2.3%
- Actinomycetota 1.1%
- Thermoproteota 1.0%
- Bacteroidota 0.9%
- Verrucomicrobiota 0.9%
- everything else 3.1%
- Gammaproteobacteria 36.6%
- Clostridia 31.8%
- Alphaproteobacteria 16.0%
- Bacilli 3.8%
- Negativicutes 2.7%
- Desulfuromonadia 2.3%
- Nitrososphaeria 1.0%
- everything else 5.9%
- Clostridiales 26.2%
- Pseudomonadales 24.5%
- Burkholderiales 12.0%
- Rhodospirillales 10.0%
- Lachnospirales 4.8%
- Azospirillales 3.9%
- Paenibacillales 3.6%
- everything else 15.0%
- Clostridiaceae 26.1%
- Pseudomonadaceae 24.1%
- Magnetospirillaceae 10.0%
- Lachnospiraceae 4.8%
- Rhodocyclaceae 4.6%
- Oxalobacteraceae 4.2%
- Azospirillaceae 3.9%
- everything else 22.2%
- Clostridium 26.1%
- Pseudomonas 24.1%
- Incertae Sedis 13.2%
- Magnetospirillum 5.6%
- Massilia 4.2%
- Azospirillum 3.9%
- Paenibacillus 3.6%
- everything else 19.3%
- uncultured bacterium 42.7%
- Pseudomonas sp. 9.0%
- Pseudomonas koreensis 6.3%
- Pseudomonas monteilii 5.0%
- Dechlorospirillum sp. I-Bh37-22 4.7%
- uncultured Rhodospirillaceae bacterium 4.5%
- Pseudomonas putida 3.6%
- everything else 24.2%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 51% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- same collection date
- shared: 454 GS FLX+, V4
- same collection date
- shared: 454 GS FLX+, V4
- same collection date
- shared: 454 GS FLX+, V4
- same collection date
- shared: 454 GS FLX+, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA254742-20260926/.