opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN02906696
T39_BA_100
- 2 run(s)
- 454 GS FLX+
- V4
- present
derived from this sample's metadata and per-run QC
13,842
Reads
353
Observed features
4.983
Shannon
0.849
Evenness
353
Chao1
Where and when
- Collected
- 2012
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 40, -83.04
- Platforms
- 454 GS FLX+
Runs
SRR1513643, SRR1513644
Per-run QC
- 16S identity
- 83.4%
- Q30
- 91.7%
- Region
- V4
- Read length
- 300 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.4%
- Archaea 0.6%
- Pseudomonadota 52.2%
- Cyanobacteriota 13.6%
- Bacteroidota 9.5%
- Bacillota 9.1%
- Verrucomicrobiota 3.4%
- Thermodesulfobacteriota 2.7%
- Actinomycetota 2.2%
- everything else 7.4%
- Gammaproteobacteria 27.0%
- Alphaproteobacteria 25.2%
- Vampirivibrionia 13.6%
- Bacteroidia 9.5%
- Clostridia 5.8%
- Verrucomicrobiia 3.4%
- Desulfuromonadia 2.5%
- everything else 13.1%
- Burkholderiales 18.2%
- Obscuribacterales 13.6%
- Caulobacterales 13.2%
- Chitinophagales 9.2%
- Pseudomonadales 7.6%
- Azospirillales 5.0%
- Incertae Sedis 3.3%
- everything else 29.8%
- Obscuribacteraceae 13.6%
- Caulobacteraceae 13.2%
- Chitinophagaceae 9.1%
- Rhodocyclaceae 7.6%
- Pseudomonadaceae 7.5%
- Alcaligenaceae 5.7%
- Azospirillaceae 5.0%
- everything else 38.2%
- Incertae Sedis 34.0%
- Caulobacter 8.6%
- Pseudomonas 7.5%
- Achromobacter 5.7%
- Dechloromonas 5.5%
- Azospirillum 5.0%
- Phenylobacterium 4.4%
- everything else 29.3%
- uncultured bacterium 64.6%
- Pseudomonas monteilii 5.9%
- Achromobacter sp. 4.5%
- Azospirillum brasilense 3.5%
- Clostridium sp. FCB90-3 2.4%
- Opitutus sp. 2.2%
- Azospirillum zeae 2.0%
- everything else 15.0%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 63% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 60% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 58% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 57% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
- composition 52% similar (genus)
- same collection date
- shared: 454 GS FLX+, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
Report a field that is empty or mistaken, or associate a paper with this study. No account is needed; the contact email is optional and used only to reply about this submission.
Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA254742-20260926/.