opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN06219828
Non-contaminated-control1
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-20cm
- control
derived from this sample's metadata and per-run QC
23,464
Reads
587
Observed features
5.801
Shannon
0.91
Evenness
587
Chao1
Where and when
- Collected
- 2014-12
- Depth
- 0-20cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 26.12, 103.53
- Platforms
- Illumina MiSeq
Runs
SRR5171677
Per-run QC
- 16S identity
- 97.0%
- Q30
- 97.8%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.3%
- Archaea 0.8%
- Chloroflexota 54.3%
- Planctomycetota 10.2%
- Acidobacteriota 9.1%
- Nitrospirota 5.0%
- Pseudomonadota 4.7%
- Methylomirabilota 3.6%
- Actinomycetota 2.3%
- everything else 10.7%
- Anaerolineae 52.7%
- Planctomycetes 7.9%
- Methylomirabilia 3.6%
- Acidobacteriae 3.1%
- Incertae Sedis 2.9%
- Vicinamibacteria 2.7%
- Thermodesulfovibrionia 2.4%
- everything else 24.8%
- Anaerolineales 21.5%
- Aggregatilineales 16.6%
- RBG-13-54-9 14.2%
- Incertae Sedis 13.2%
- Gemmatales 4.7%
- Rokubacteriales 3.2%
- Vicinamibacterales 2.4%
- everything else 24.2%
- Incertae Sedis 42.1%
- Anaerolineaceae 21.5%
- Aggregatilineaceae 12.6%
- Gemmataceae 4.7%
- Isosphaeraceae 1.7%
- A4b 1.5%
- WD2101 soil group 1.3%
- everything else 14.6%
- Incertae Sedis 84.4%
- Anaerolinea 2.9%
- Leptolinea 1.4%
- Candidatus Udaeobacter 1.2%
- Aquisphaera 1.0%
- Reyranella 1.0%
- Candidatus Solibacter 0.8%
- everything else 7.5%
- uncultured bacterium 81.6%
- uncultured Anaerolineaceae bacterium 2.4%
- uncultured Bellilinea sp. 2.3%
- uncultured Chloroflexi bacterium 2.1%
- uncultured Nitrospirae bacterium 1.7%
- metagenome 1.3%
- uncultured soil bacterium 1.1%
- everything else 7.5%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2. (SINTAX).
Similar samples
genus composition and metadata- composition 95% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 94% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 92% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 91% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 89% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA361046-20260926/.