opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN06219832
Non-contaminated-control5
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-20cm
- control
derived from this sample's metadata and per-run QC
20,348
Reads
648
Observed features
5.977
Shannon
0.923
Evenness
648
Chao1
Where and when
- Collected
- 2014-12
- Depth
- 0-20cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 26.16, 103.53
- Platforms
- Illumina MiSeq
Runs
SRR5171673
Per-run QC
- 16S identity
- 97.6%
- Q30
- 97.6%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Archaea 0.0%
- Chloroflexota 35.8%
- Planctomycetota 12.4%
- Acidobacteriota 10.2%
- Pseudomonadota 8.4%
- Nitrospirota 6.9%
- Actinomycetota 4.1%
- Myxococcota 4.1%
- everything else 18.1%
- Anaerolineae 34.1%
- Planctomycetes 10.7%
- Acidobacteriae 5.4%
- Alphaproteobacteria 4.3%
- Thermodesulfovibrionia 4.2%
- Gammaproteobacteria 4.1%
- Methylomirabilia 3.6%
- everything else 33.6%
- Anaerolineales 14.3%
- Incertae Sedis 14.1%
- RBG-13-54-9 11.3%
- Gemmatales 8.5%
- Aggregatilineales 7.7%
- Rokubacteriales 3.3%
- Terriglobales 2.8%
- everything else 37.8%
- Incertae Sedis 43.0%
- Anaerolineaceae 14.3%
- Gemmataceae 8.5%
- Aggregatilineaceae 6.2%
- Xanthobacteraceae 1.7%
- Chthoniobacteraceae 1.5%
- Micromonosporaceae 1.4%
- everything else 23.4%
- Incertae Sedis 76.6%
- Anaerolinea 4.3%
- Candidatus Udaeobacter 1.5%
- Leptolinea 1.3%
- Desulfobacca 1.3%
- Gemmata 1.1%
- Pajaroellobacter 0.8%
- everything else 13.2%
- uncultured bacterium 77.5%
- uncultured Nitrospirae bacterium 1.9%
- metagenome 1.8%
- uncultured soil bacterium 1.8%
- uncultured Anaerolineaceae bacterium 1.5%
- uncultured Acidobacteria bacterium 1.4%
- uncultured Chloroflexi bacterium 1.3%
- everything else 12.8%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2. (SINTAX).
Similar samples
genus composition and metadata- composition 95% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 94% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 94% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 94% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 92% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA361046-20260926/.