opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN06704750
Cd_contaminated_upland_soil_3
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-20cm
- Cd-upland
derived from this sample's metadata and per-run QC
20,630
Reads
460
Observed features
5.292
Shannon
0.863
Evenness
460
Chao1
Where and when
- Collected
- 2014-12
- Depth
- 0-20cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 26.14, 103.53
- Platforms
- Illumina MiSeq
Runs
SRR5435163
Per-run QC
- 16S identity
- 97.6%
- Q30
- 97.7%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.8%
- Archaea 0.2%
- Chloroflexota 67.0%
- Planctomycetota 8.6%
- Acidobacteriota 4.8%
- Candidatus Eremiobacterota 4.3%
- Pseudomonadota 3.8%
- Cyanobacteriota 2.2%
- Actinomycetota 1.8%
- everything else 7.5%
- Anaerolineae 53.4%
- Planctomycetes 7.6%
- Ktedonobacteria 7.4%
- Eremiobacteria 4.3%
- AD3 4.3%
- Acidobacteriae 3.1%
- Gammaproteobacteria 2.6%
- everything else 17.3%
- RBG-13-54-9 23.9%
- Anaerolineales 22.6%
- Incertae Sedis 12.6%
- Ktedonobacterales 7.0%
- Aggregatilineales 6.8%
- Isosphaerales 5.3%
- Terriglobales 2.0%
- everything else 19.9%
- Incertae Sedis 45.0%
- Anaerolineaceae 22.6%
- Aggregatilineaceae 6.5%
- Ktedonobacteraceae 5.8%
- Isosphaeraceae 5.3%
- Chthoniobacteraceae 0.9%
- Gemmataceae 0.9%
- everything else 12.9%
- Incertae Sedis 75.8%
- Anaerolinea 3.5%
- Aquisphaera 2.0%
- 1921-2 1.6%
- HSB OF53-F07 1.6%
- JG30a-KF-32 1.0%
- Isosphaera 1.0%
- everything else 13.5%
- uncultured bacterium 72.3%
- uncultured Bellilinea sp. 9.4%
- uncultured Chloroflexi bacterium 2.6%
- uncultured Anaerolineaceae bacterium 2.5%
- uncultured Caldilineaceae bacterium 1.8%
- uncultured soil bacterium 1.8%
- uncultured Ktedonobacter sp. 1.1%
- everything else 8.5%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2. (SINTAX).
Similar samples
genus composition and metadata- composition 94% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 94% similar (genus)
- same collection date
- shared: 0-20cm, Cd-upland
- composition 92% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 90% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 90% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA361046-20260926/.