opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN06219835
Non-contaminated-control8
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-20cm
- control
derived from this sample's metadata and per-run QC
18,976
Reads
544
Observed features
5.738
Shannon
0.911
Evenness
544
Chao1
Where and when
- Collected
- 2014-12
- Depth
- 0-20cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 26.19, 103.53
- Platforms
- Illumina MiSeq
Runs
SRR5171670
Per-run QC
- 16S identity
- 97.6%
- Q30
- 97.8%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Incertae Sedis 334 (1.8%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.9%
- Archaea 0.1%
- Chloroflexota 31.3%
- Acidobacteriota 12.4%
- Nitrospirota 11.1%
- Planctomycetota 10.3%
- Pseudomonadota 7.1%
- Methylomirabilota 5.9%
- Myxococcota 4.6%
- everything else 17.3%
- Anaerolineae 29.8%
- Planctomycetes 8.2%
- Acidobacteriae 6.3%
- Methylomirabilia 5.9%
- Incertae Sedis 5.8%
- Thermodesulfovibrionia 5.5%
- 4-29-1 5.3%
- everything else 33.2%
- Incertae Sedis 21.4%
- Anaerolineales 11.9%
- RBG-13-54-9 11.6%
- Gemmatales 6.7%
- Aggregatilineales 5.8%
- Rokubacteriales 5.5%
- Subgroup 2 3.0%
- everything else 34.0%
- Incertae Sedis 51.7%
- Anaerolineaceae 11.9%
- Gemmataceae 6.7%
- Aggregatilineaceae 4.3%
- Desulfobaccaceae 1.4%
- Xanthobacteraceae 1.3%
- Polyangiaceae 1.2%
- everything else 21.5%
- Incertae Sedis 80.6%
- Anaerolinea 2.6%
- Desulfobacca 1.4%
- Leptolinea 1.4%
- Candidatus Udaeobacter 1.0%
- Pajaroellobacter 0.9%
- Reyranella 0.7%
- everything else 11.2%
- uncultured bacterium 79.2%
- uncultured Nitrospirae bacterium 3.8%
- uncultured soil bacterium 2.2%
- uncultured Anaerolineaceae bacterium 1.7%
- metagenome 1.4%
- uncultured Chloroflexi bacterium 1.3%
- uncultured Acidobacteria bacterium 1.1%
- everything else 9.3%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2. (SINTAX).
Similar samples
genus composition and metadata- composition 96% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 96% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 95% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 95% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 92% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA361046-20260926/.