opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN06219831
Non-contaminated-control4
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-20cm
- control
derived from this sample's metadata and per-run QC
26,958
Reads
645
Observed features
5.841
Shannon
0.903
Evenness
645
Chao1
Where and when
- Collected
- 2014-12
- Depth
- 0-20cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 26.15, 103.53
- Platforms
- Illumina MiSeq
Runs
SRR5171674
Per-run QC
- 16S identity
- 97.3%
- Q30
- 97.7%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Incertae Sedis 486 (1.8%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.3%
- Archaea 0.8%
- Chloroflexota 34.9%
- Planctomycetota 14.7%
- Acidobacteriota 13.1%
- Nitrospirota 7.0%
- Pseudomonadota 6.7%
- Methylomirabilota 6.0%
- Actinomycetota 2.7%
- everything else 14.9%
- Anaerolineae 32.6%
- Planctomycetes 11.9%
- Methylomirabilia 6.0%
- Acidobacteriae 5.3%
- Incertae Sedis 4.4%
- Vicinamibacteria 3.5%
- Alphaproteobacteria 3.4%
- everything else 33.0%
- Incertae Sedis 15.9%
- RBG-13-54-9 12.7%
- Anaerolineales 10.4%
- Aggregatilineales 9.2%
- Gemmatales 9.0%
- Rokubacteriales 5.5%
- Vicinamibacterales 3.2%
- everything else 34.1%
- Incertae Sedis 47.8%
- Anaerolineaceae 10.4%
- Gemmataceae 9.0%
- Aggregatilineaceae 7.5%
- WD2101 soil group 1.5%
- Chthoniobacteraceae 1.4%
- Pirellulaceae 1.1%
- everything else 21.4%
- Incertae Sedis 81.3%
- Anaerolinea 1.4%
- Candidatus Udaeobacter 1.3%
- Gemmata 1.0%
- Desulfobacca 1.0%
- Leptospirillum 1.0%
- Leptolinea 0.9%
- everything else 12.3%
- uncultured bacterium 78.0%
- uncultured Anaerolineaceae bacterium 2.2%
- uncultured soil bacterium 2.1%
- uncultured Chloroflexi bacterium 1.9%
- uncultured Nitrospirae bacterium 1.8%
- uncultured Acidobacteria bacterium 1.6%
- uncultured planctomycete 1.3%
- everything else 11.1%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2. (SINTAX).
Similar samples
genus composition and metadata- composition 96% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 94% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 94% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 94% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 89% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA361046-20260926/.