opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN06219836
Non-contaminated-control9
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-20cm
- control
derived from this sample's metadata and per-run QC
26,958
Reads
749
Observed features
6.02
Shannon
0.909
Evenness
749
Chao1
Where and when
- Collected
- 2014-12
- Depth
- 0-20cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 26.2, 103.53
- Platforms
- Illumina MiSeq
Runs
SRR5171669
Per-run QC
- 16S identity
- 97.8%
- Q30
- 97.7%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.9%
- Archaea 0.1%
- Chloroflexota 22.8%
- Acidobacteriota 15.5%
- Planctomycetota 10.4%
- Nitrospirota 10.4%
- Pseudomonadota 10.2%
- Myxococcota 6.0%
- Thermodesulfobacteriota 4.3%
- everything else 20.4%
- Anaerolineae 21.0%
- Acidobacteriae 9.0%
- Planctomycetes 8.3%
- Incertae Sedis 6.5%
- Thermodesulfovibrionia 5.3%
- Alphaproteobacteria 5.3%
- Gammaproteobacteria 4.9%
- everything else 39.7%
- Incertae Sedis 23.1%
- Anaerolineales 8.4%
- RBG-13-54-9 7.4%
- Gemmatales 6.8%
- Aggregatilineales 4.8%
- Subgroup 2 4.7%
- Rokubacteriales 4.0%
- everything else 40.9%
- Incertae Sedis 50.2%
- Anaerolineaceae 8.4%
- Gemmataceae 6.8%
- Aggregatilineaceae 3.7%
- Desulfobaccaceae 1.6%
- Micromonosporaceae 1.5%
- Xanthobacteraceae 1.5%
- everything else 26.3%
- Incertae Sedis 77.9%
- Anaerolinea 1.9%
- Desulfobacca 1.6%
- Reyranella 1.3%
- Pajaroellobacter 1.2%
- Anaeromyxobacter 0.8%
- Candidatus Udaeobacter 0.7%
- everything else 14.7%
- uncultured bacterium 74.7%
- uncultured Nitrospirae bacterium 6.0%
- metagenome 1.6%
- uncultured Alphaproteobacteria bacterium 1.4%
- uncultured Acidobacteria bacterium 1.3%
- uncultured delta proteobacterium 1.3%
- uncultured Chloroflexi bacterium 1.2%
- everything else 12.5%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2. (SINTAX).
Similar samples
genus composition and metadata- composition 96% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 94% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 94% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 92% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 91% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA361046-20260926/.