opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN06219829
Non-contaminated-control2
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-20cm
- control
derived from this sample's metadata and per-run QC
21,767
Reads
692
Observed features
6.073
Shannon
0.929
Evenness
692
Chao1
Where and when
- Collected
- 2014-12
- Depth
- 0-20cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 26.13, 103.53
- Platforms
- Illumina MiSeq
Runs
SRR5171676
Per-run QC
- 16S identity
- 97.8%
- Q30
- 97.6%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.9%
- Archaea 0.1%
- Chloroflexota 34.1%
- Pseudomonadota 12.0%
- Acidobacteriota 11.8%
- Planctomycetota 11.7%
- Nitrospirota 5.9%
- Actinomycetota 4.5%
- Myxococcota 4.1%
- everything else 16.0%
- Anaerolineae 32.1%
- Planctomycetes 9.5%
- Alphaproteobacteria 6.1%
- Gammaproteobacteria 5.9%
- Acidobacteriae 5.9%
- Thermodesulfovibrionia 3.4%
- Verrucomicrobiia 3.4%
- everything else 33.8%
- Anaerolineales 16.1%
- Incertae Sedis 13.5%
- Aggregatilineales 7.9%
- RBG-13-54-9 7.7%
- Gemmatales 7.0%
- Burkholderiales 3.6%
- Rokubacteriales 2.9%
- everything else 41.4%
- Incertae Sedis 36.4%
- Anaerolineaceae 16.1%
- Gemmataceae 7.0%
- Aggregatilineaceae 6.7%
- Chthoniobacteraceae 2.1%
- Reyranellaceae 1.8%
- WD2101 soil group 1.8%
- everything else 28.0%
- Incertae Sedis 71.8%
- Anaerolinea 5.0%
- Candidatus Udaeobacter 2.1%
- Reyranella 1.8%
- Leptolinea 1.7%
- Pajaroellobacter 1.0%
- Desulfobacca 0.9%
- everything else 15.6%
- uncultured bacterium 77.2%
- metagenome 2.2%
- uncultured Acidobacteria bacterium 2.0%
- uncultured Chloroflexi bacterium 1.8%
- uncultured Nitrospirae bacterium 1.7%
- uncultured Alphaproteobacteria bacterium 1.5%
- uncultured delta proteobacterium 1.3%
- everything else 12.4%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2. (SINTAX).
Similar samples
genus composition and metadata- composition 95% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 94% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 92% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 91% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 89% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA361046-20260926/.