opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN06219833
Non-contaminated-control6
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-20cm
- control
derived from this sample's metadata and per-run QC
22,927
Reads
754
Observed features
6.261
Shannon
0.945
Evenness
754
Chao1
Where and when
- Collected
- 2014-12
- Depth
- 0-20cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 26.17, 103.53
- Platforms
- Illumina MiSeq
Runs
SRR5171672
Per-run QC
- 16S identity
- 98.0%
- Q30
- 97.6%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Incertae Sedis 91 (0.4%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.8%
- Archaea 0.2%
- Chloroflexota 33.1%
- Pseudomonadota 14.5%
- Acidobacteriota 10.0%
- Planctomycetota 9.4%
- Actinomycetota 6.7%
- Myxococcota 6.6%
- Nitrospirota 4.4%
- everything else 15.4%
- Anaerolineae 30.0%
- Alphaproteobacteria 8.1%
- Planctomycetes 6.9%
- Gammaproteobacteria 6.4%
- Polyangiia 5.3%
- Acidobacteriae 5.0%
- Actinobacteria 3.8%
- everything else 34.5%
- Anaerolineales 16.6%
- Incertae Sedis 12.5%
- Aggregatilineales 6.2%
- RBG-13-54-9 6.0%
- Gemmatales 4.3%
- Polyangiales 4.0%
- Burkholderiales 3.4%
- everything else 47.1%
- Incertae Sedis 32.3%
- Anaerolineaceae 16.6%
- Aggregatilineaceae 5.0%
- Gemmataceae 4.3%
- Xanthobacteraceae 2.6%
- Micromonosporaceae 2.1%
- WD2101 soil group 1.9%
- everything else 35.2%
- Incertae Sedis 66.9%
- Anaerolinea 5.1%
- Reyranella 1.7%
- Pajaroellobacter 1.4%
- Leptolinea 1.3%
- Candidatus Udaeobacter 1.2%
- Gemmata 1.1%
- everything else 21.2%
- uncultured bacterium 77.1%
- uncultured soil bacterium 2.3%
- uncultured Chloroflexi bacterium 2.1%
- metagenome 2.0%
- uncultured Acidobacteria bacterium 1.7%
- uncultured Alphaproteobacteria bacterium 1.4%
- uncultured Nitrospirae bacterium 1.1%
- everything else 12.3%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2. (SINTAX).
Similar samples
genus composition and metadata- composition 95% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 91% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 88% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 88% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 87% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
Report a field that is empty or mistaken, or associate a paper with this study. No account is needed; the contact email is optional and used only to reply about this submission.
Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA361046-20260926/.