opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN06219834
Non-contaminated-control7
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-20cm
- control
derived from this sample's metadata and per-run QC
25,509
Reads
543
Observed features
5.271
Shannon
0.837
Evenness
543
Chao1
Where and when
- Collected
- 2014-12
- Depth
- 0-20cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 26.18, 103.53
- Platforms
- Illumina MiSeq
Runs
SRR5171671
Per-run QC
- 16S identity
- 97.9%
- Q30
- 97.6%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Incertae Sedis 3,774 (14.8%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Archaea 0.1%
- Chloroflexota 62.0%
- Acidobacteriota 8.0%
- Planctomycetota 7.8%
- Candidatus Eremiobacterota 5.0%
- Actinomycetota 4.2%
- Pseudomonadota 3.5%
- Nitrospirota 1.6%
- everything else 7.9%
- Anaerolineae 47.9%
- Ktedonobacteria 7.5%
- Planctomycetes 6.6%
- Acidobacteriae 6.3%
- Eremiobacteria 5.0%
- AD3 3.5%
- Actinobacteria 2.8%
- everything else 20.5%
- RBG-13-54-9 29.4%
- Anaerolineales 15.7%
- Incertae Sedis 15.3%
- Ktedonobacterales 6.9%
- Terriglobales 3.6%
- Isosphaerales 2.8%
- Aggregatilineales 2.4%
- everything else 23.7%
- Incertae Sedis 55.4%
- Anaerolineaceae 15.7%
- Ktedonobacteraceae 6.2%
- Isosphaeraceae 2.8%
- Gemmataceae 2.4%
- Aggregatilineaceae 2.3%
- Acidothermaceae 1.9%
- everything else 13.3%
- Incertae Sedis 75.8%
- Anaerolinea 6.3%
- HSB OF53-F07 2.6%
- 1921-2 2.1%
- Acidothermus 1.9%
- Aquisphaera 0.9%
- Pajaroellobacter 0.7%
- everything else 9.7%
- uncultured bacterium 75.8%
- uncultured Anaerolineaceae bacterium 3.5%
- uncultured Chloroflexi bacterium 2.6%
- uncultured Bellilinea sp. 2.5%
- uncultured Acidobacteria bacterium 1.9%
- uncultured Ktedonobacter sp. 1.7%
- uncultured forest soil bacterium 1.7%
- everything else 10.4%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2. (SINTAX).
Similar samples
genus composition and metadata- composition 96% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 94% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 91% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 89% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 89% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA361046-20260926/.