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SAMN06704751
Cd_contaminated_upland_soil_4
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-20cm
- Cd-upland
derived from this sample's metadata and per-run QC
24,074
Reads
551
Observed features
5.372
Shannon
0.851
Evenness
551
Chao1
Where and when
- Collected
- 2014-12
- Depth
- 0-20cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 26.15, 103.53
- Platforms
- Illumina MiSeq
Runs
SRR5435162
Per-run QC
- 16S identity
- 98.4%
- Q30
- 97.7%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Incertae Sedis 3,510 (14.6%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Archaea 0.0%
- Chloroflexota 57.0%
- Acidobacteriota 9.5%
- Planctomycetota 7.3%
- Actinomycetota 4.8%
- Pseudomonadota 4.4%
- Candidatus Eremiobacterota 3.9%
- Nitrospirota 2.9%
- everything else 10.1%
- Anaerolineae 45.0%
- Ktedonobacteria 8.1%
- Acidobacteriae 7.7%
- Planctomycetes 6.6%
- Eremiobacteria 3.9%
- Actinobacteria 3.1%
- Alphaproteobacteria 3.1%
- everything else 22.5%
- RBG-13-54-9 28.8%
- Incertae Sedis 14.5%
- Anaerolineales 13.5%
- Ktedonobacterales 7.3%
- Terriglobales 5.0%
- Isosphaerales 4.0%
- Frankiales 2.4%
- everything else 24.6%
- Incertae Sedis 55.9%
- Anaerolineaceae 13.5%
- Ktedonobacteraceae 6.3%
- Isosphaeraceae 4.0%
- Acidothermaceae 2.1%
- Aggregatilineaceae 2.1%
- Gemmataceae 1.7%
- everything else 14.4%
- Incertae Sedis 73.4%
- Anaerolinea 5.1%
- HSB OF53-F07 3.0%
- Acidothermus 2.1%
- 1921-2 1.6%
- Aquisphaera 1.6%
- Candidatus Solibacter 0.8%
- everything else 12.3%
- uncultured bacterium 76.9%
- uncultured Anaerolineaceae bacterium 3.4%
- uncultured Bellilinea sp. 2.5%
- uncultured Ktedonobacter sp. 1.9%
- uncultured Acidobacteria bacterium 1.8%
- uncultured Chloroflexi bacterium 1.8%
- uncultured Caldilineaceae bacterium 1.4%
- everything else 10.2%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2. (SINTAX).
Similar samples
genus composition and metadata- composition 96% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 94% similar (genus)
- same collection date
- shared: 0-20cm, Cd-upland
- composition 92% similar (genus)
- same collection date
- shared: 0-20cm, Cd-upland
- composition 89% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 89% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA361046-20260926/.